Siniperca chuatsi (mandarin fish): 122878679
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Entry
122878679 CDS
T08948
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
122878679 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122878679 (supt5h)
03019 Messenger RNA biogenesis [BR:
schu03019
]
122878679 (supt5h)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
122878679 (supt5h)
RNA polymerase I system
122878679 (supt5h)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
122878679 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW4_SPT5
KOW
KOW2_Spt5
KOW5_SPT5
KOW7_SPT5
Spt5-NGN
KOW6_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
GPKOW_C
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
122878679
NCBI-ProteinID:
XP_044057740
LinkDB
All DBs
Position
LG7:complement(30561571..30590147)
Genome browser
AA seq
1106 aa
AA seq
DB search
MVQSAQGYKMSDSDDSDFSDNQSERSSDGEAEEVENEEETGSPVGSDKVAEEEGEDLEDE
EEYDEEEEEDDDDRPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKVNEEAEVS
NIDHVVLDEDHSGSRRLQNLWRDSREEALGEYYMRKYAKSSGGEHYSGGSEELSDEITQQ
QLLPGVKDPNLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVE
SYKQTHVKSAIEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKD
DIAQVDYVEPSQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPAQRLFDAEKIRSL
GGEVSHDGDFMIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGIDLEVV
TESGKEREHNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELR
KYFRMGDHVKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVD
AGGQHEWGELVQLDPQTVGVIVRLERETFQVLNMHGKVMTVRHQAVNRRKDNRFAVALDS
EQNNIHVKDIVKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGS
KPRDVTNFTVGGFAPMSPRISSPMHHGGGGAPQRGGGGGGGGGGGGGGGGGGGGGMGRGR
GRRDNELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRH
SGMTSTHGRTPIYGSQTPMYGTGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQS
GAWDPSNPNTPSRNEEEYDFGYDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQT
PGTPAMYNTEQYSPYAAPSPQGSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMA
YQASPSPSPVGYSPMTPGAPSPGGYNPHTPGSNIEQGSSDWVTTDILVRVKDSFMDLMGQ
TGVIRSVTGGMCSVFMQESEKVVSISSDHLEPITPTKNNKVKVILGEDREATGILLSIDG
DDGIVRMELDDQLKILNLRFLGRLEH
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atggttcagtctgcccagggctacaagatgtctgacagcgacgacagcgacttctccgac
aaccagagtgagcgcagcagcgacggagaggccgaggaggtggagaatgaggaggagacc
ggcagtcccgttggcagcgacaaggtagcggaggaggagggggaggacctggaagatgag
gaggagtatgatgaagaggaggaggaggacgatgatgaccgtcccaggaagaagccgaga
catggagggttcatcctggacgaagccgatgtggatgatgagtatgaggacgaggaagac
cagtgggaggaaggagccgaagatattctggagaaagttaacgaggaggctgaagtgtcc
aacatcgaccacgtggttctggatgaagatcactctggatccagaaggctgcagaacctc
tggagagactccagagaggaggcgctgggtgaatattacatgaggaagtatgccaagtcc
tcaggaggcgagcattactctggagggtccgaggaactttctgatgaaatcacccagcag
caactgcttcctggtgtcaaggatcccaatctctggacggtcaagtgcaagattggagag
gagagggcgacggccatcgcattgatgaggaagttcatcgcctaccagttcaccgacaca
cctttgcagatcaagtccgtggtcgccccggaccacgttaaaggttacatctacgtggag
tcgtacaagcagacgcacgtcaagtcagccatcgaaggcatcggcaacctgaggatgggc
ctctggaaccagcagatggttcccatcaaagagatgacggacgtcctcaaggtcgtcaaa
gaggtcaccaatctgaagcccaagtcctgggtccggctgaagagaggcctgtacaaggac
gacatcgctcaggtggactacgtggagccgagtcaaaacaccatctccctgaagatgatc
cctcgtatagacctggaccgtatcaaggccaagatgagcctgaaagactggttcgctaag
aggaagaagtttaagagacctgctcagaggctgtttgatgctgaaaagatcaggtccctc
ggaggggaggtcagccatgacggagacttcatgatctttgaggggaaccgttacagccgt
aaaggattcctgtttaagagctttgccatgtccgctgtgatcacagacggagtgaagccc
actctgtcagagctggagaagttcgaagaccagcctgaaggaatcgacctggaggtggtc
accgagtcaggtaaggagcgtgaacacaacctgcaggccggcgacaacgtggaggtttgc
gagggagagttgatcaacctgcaggggaaaattctcagtgtggacggcaacaagatcacc
atcatgcccaaacacgaagacctgaaggaccccctggagttcccggctcatgagttgaga
aaatatttccggatgggcgaccacgtgaaggtgatcgccgggcgatacgagggtgacacg
ggcctcatcgtcagagtggaagagaacttcgtcatcctcttctccgacctcaccatgcac
gagttgaaggtgttgcccagagacctgcagctctgctcggagacggcgtctggcgtcgat
gcgggagggcagcatgagtggggcgagctggtccagctggacccacagaccgtcggagtc
atcgtccgactggagagagagacgtttcaggtgttgaacatgcacgggaaggtaatgacg
gtgcggcaccaggcggtgaaccgcaggaaggacaaccgcttcgctgtggctctggactcg
gagcagaacaatatccacgtcaaggacatcgtcaaggttatcgacgggccgcactctggc
cgtgaaggggagatccgtcacctgttccgaggcttcgccttcctccactgtaagaagttg
gtggagaacggaggcatgttcgtctgcaagacccgacacctggtgctggctggtggatcc
aagcccagagacgtgaccaacttcacggtgggaggctttgctccaatgagccctcgcatc
agcagtcccatgcaccacggcggaggaggtgctccgcagagaggaggaggaggaggagga
ggcggaggaggaggaggtggaggaggaggaggaggaggaggaggaatggggcgcggcaga
ggacgaagagacaatgagctgattggtcagacggtccgcatctctcagggtccttacaaa
ggttacatcggtgtggtgaaggacgcaacagagtctacagccagagtggagctgcactcc
acctgtcagaccatctctgtagaccgacagcgcttaaccaccatgggagctaagagacac
agtgggatgacctccacccacggacggacgcccatttacggctcccagactcccatgtac
ggtaccggctccagaacgcccatgtacgggtctcagacaccgctgcatgacggaagccgt
acgcctcactacggctctcagaccccgctgcatgatgggagcaggacgccgggtcagagc
ggagcctgggaccccagcaaccccaacacaccttccagaaatgaagaggagtacgacttt
ggctacgacgacgagccctcaccgtcccctcagggctacggggggacccccaacccccag
acgccgggttacccagaagtcccctctccacaggtcaaccctcagtacaaccctcagaca
cctggcacgcctgctatgtataacacagagcagtattccccctacgctgccccgtcccct
cagggctcctaccagcccagccccagtcctcagagctaccaccaggtggcgccctcacca
gtcggctaccagaacacgcactctccagccagctaccatccgacaccctccccgatggct
tatcaggccagtcctagtcccagtcccgtgggctacagtcccatgacgcccggagcgccc
tctcccggaggttacaaccctcacaccccgggctccaacatcgagcagggcagcagcgac
tgggtgaccaccgacatcctggtccgggtgaaggactccttcatggacctgatgggacag
accggggtcatcaggagtgtcacgggagggatgtgctcggtgttcatgcaggagtcggag
aaggtggtcagcatcagcagcgatcacctggagcccatcactcccaccaagaacaacaag
gtgaaggtgattctgggagaagaccgcgaggcgacggggatcctgctgagtatcgacgga
gacgacggcattgtccgcatggagttggacgaccagctgaagatcctcaacctgaggttc
ctgggacgcctcgagcactga
DBGET
integrated database retrieval system
