Siniperca chuatsi (mandarin fish): 122878681
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Entry
122878681 CDS
T08948
Symbol
dhx36
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122878681 (dhx36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122878681 (dhx36)
03012 Translation factors [BR:
schu03012
]
122878681 (dhx36)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122878681 (dhx36)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
122878681 (dhx36)
Translation factors [BR:
schu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
122878681 (dhx36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
DUF7428
ATPase
AAA_19
Motif
Other DBs
NCBI-GeneID:
122878681
NCBI-ProteinID:
XP_044057746
LinkDB
All DBs
Position
LG7:complement(20211733..20236305)
Genome browser
AA seq
1066 aa
AA seq
DB search
MSYGYGGGGGRRGRRGGRGYRDGSRERWDRGGGGGSRGHSSDFDQDGGGGQRDRPPPHLK
GREIGLWYARYGAVRRKQADRRSRAVVQMDEAREQHITKLLNSVQNDQPGPERDGWDARA
STSGNWPTSANRSGHCYFDGDEPEEDKQKIEIKSEEEEEDISPGQIKATHKSQRYISPAV
AKDEPPDKWDEEEQPEEEKEKLRRKDKDLEFLFQEVVRDSSLDDCLKRDLQSKKSDPKYK
EMLKFREKLPSYGKKEELVELINLNRVLVVSGETGCGKTTQVTQFILDDYINRGVGSMCR
VVCTQPRRISAISVAERVAAERAESVGNGNSCGYQIRLQSRLPRRQGSVLYCTTGIILQW
LRSDPLLSSISHLVLDEIHERNLQSDVLLVIVKDLLKLRDDLTVILMSATLNAEKFSRYF
DNCPMIHISGLTFPVEEFLLEDIVEMTRYRPQNQDRRSSWKRGFLQGRNSRPEKEEKEAE
YKESWPCYARTLQGRYSDNTIEALEMLDNDEKIDLELILALICHIVLKDEEGAILVFLPG
WDNISSLNDLLMAQQMFRSDRFVIIPLHSLMPTVNQAQVFKRPPPGVRKIVIATNIAETS
ITIDDVVYVIDGGKIKETNFDTNNNISTMTAEWVSLANAKQRKGRAGRVRPGKCYHLYNG
LRASLLDAYQLPEIMRTPLEELCLQIKILKLGFITHFLEKALDPPTEKAVNLAIKNLIDL
NALDRAENLTALGFHLARLPVEPHIGKLILFGALLGCLDPVLTIAASLSFKDPFFIPLGK
EKMADMRRKVLSRNSKSDHLTIVNAFQGWEEAKQRGARYEREYCWDNFLSANTLQMLHNM
KGQFAEHLMHTGFVSSRDPKDPKSNVNSDNEKLIKAVIVAGLYPKVAMIRPSHSKKRPGV
KVYTQADGKVCIHPKSVNAEETEFNYTWLIYHLKMRTSSIFLYDCTEVSPFSLLFFGGDI
TIQKDEDQETIAVDQWIVFRSPARIAHLVKSLKKELDSLLEEKIRNPAPVDWQNRQSKDC
AVITAIIDLITTQEKPTGSTKGYGRTWASAQRGQHMYFNDDDDDDD
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atgagttatggatatggcggtggaggtgggagaagaggcagaagaggaggtcgagggtac
agagatggaagcagagaaagatgggacagaggaggtggaggaggctcgagaggacacagt
tccgactttgaccaggacggaggaggtggacaacgggaccgtcctcctccacacctaaag
ggccgtgagataggtctctggtatgcaagatacggagccgtgaggaggaagcaggctgac
cggagatcgcgggcagtggtccagatggatgaggccagagagcagcacattaccaagcta
cttaactctgtccaaaatgatcagcctggtccagagagagatggctgggatgcaagagcc
tctacgtctggcaactggccgacatctgccaatagaagcggtcattgttactttgatggg
gatgagcctgaagaggataaacagaagattgagatcaaatctgaggaagaggaggaagat
attagtccgggccagataaaagcaactcacaaatcacaacgttacatctctccggcagtc
gctaaagatgagcctccagacaagtgggatgaagaagagcagccagaggaggagaaagag
aaactgagaaggaaagataaggatctggagttcttatttcaggaagtagtcagagacagt
tcactggatgactgcttaaagagagatctgcagagcaagaaatcagatccaaagtacaaa
gaaatgctgaaattcagggaaaaactaccatcctatgggaaaaaagaggagctggtggag
ctgatcaatttgaaccgtgtcctggtggtgagtggagaaacagggtgtggaaagaccact
caggtcacccaattcatcctagatgactatatcaacagaggcgtaggctcgatgtgtcgt
gtggtctgcacgcagcctcgtcgcatcagtgccatctcggtagcagagcgtgtagcagca
gagagggcagaaagtgtaggaaatggaaattcttgtggttaccaaatccgcctccagagc
cggttaccacggagacaaggttcggtcctgtattgtacaacaggcattattcttcagtgg
cttcgctcagacccattgttgtctagtattagccacctggtgctggacgagatccacgag
agaaacctgcaatctgacgttttgctcgtcattgtgaaggaccttctcaagctccgagac
gacctcacggtcatcctcatgagtgccacgctcaacgcagagaagttttctagatatttt
gacaactgtccaatgatccacatctctggtttgacgttcccagtggaagagttcctactt
gaggacattgtggagatgaccaggtatcgtccccagaatcaggaccgtcgctcctcgtgg
aaaagaggctttttgcaagggcgcaactccagacctgagaaggaggaaaaagaggctgaa
tacaaggagagctggccttgctatgcacgcacactgcagggcagatactctgacaacacc
attgaggcactagagatgttggacaatgatgagaagattgacctggagctcatcctggca
ctgatttgccatattgtgctcaaggatgaggaaggagctatcttggtcttcctgcctggc
tgggacaacatcagcagtctcaatgacctgctcatggctcagcagatgttccgatcagac
cggtttgttatcatccctttgcactccctcatgcctaccgttaatcaggcgcaggtgttc
aaaaggcctcctcctggagttagaaagattgtgatcgctaccaatatagctgagaccagc
atcaccatagatgacgttgtttatgtgatagatggaggcaaaattaaggagaccaacttt
gataccaacaacaacatcagcactatgacagcagagtgggttagcctggccaatgccaaa
cagaggaaaggacgtgctggcagagtgcgtccagggaagtgctatcatctgtacaatggt
ctcagggccagcctgctggatgcctatcaattacccgaaatcatgaggacaccactggag
gagctctgcctgcagatcaagatattaaagcttgggtttataactcatttcctggagaag
gccctggaccctcccactgaaaaggccgtcaacctagccatcaagaacctcatagacctg
aacgccctggaccgtgcagagaatctgacagcgctaggtttccacctggctcgtctgcct
gtggagcctcacattggcaaactcatcctgtttggggctctgttgggctgcctcgacccc
gtactcaccattgctgcttcactcagcttcaaagaccctttctttatacccctgggtaaa
gagaagatggcagacatgaggagaaaggtcctgtccagaaactccaagagtgaccacctc
actattgtcaatgccttccagggctgggaagaagcgaaacagcgtggtgcaaggtatgag
agggagtactgctgggacaacttcctgtctgccaatacactccagatgctgcacaacatg
aagggtcagtttgctgagcatctaatgcatacaggctttgtcagcagcagggaccccaaa
gaccccaaatctaacgtcaactcggacaatgagaagttaatcaaagcagtgattgtagct
ggtctgtacccgaaggtggccatgatcagaccatctcatagcaaaaagaggccgggggtt
aaggtgtacacccaggctgatggaaaggtgtgtatccacccgaaatctgtcaatgctgaa
gagactgagttcaactatacgtggctcatctaccacctcaaaatgagaacgagcagtatt
ttcctgtacgattgcactgaggtgtcccccttctcactgctgttctttggaggagacatc
acaatccagaaagacgaggaccaggagaccatcgcagtggaccagtggattgtcttcaga
tccccggcacgcatcgctcaccttgtcaagagtttaaagaaagagttggattctctgctg
gaggagaaaattcgtaaccctgctcctgtggactggcaaaaccgtcaatctaaagactgt
gctgtcatcacagccatcatagacctcatcaccacccaggagaagcctacaggcagcact
aagggctatggcagaacatgggcatctgcccaaagaggacaacacatgtacttcaatgac
gatgatgacgacgacgactag
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