Siniperca chuatsi (mandarin fish): 122879014
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Entry
122879014 CDS
T08948
Symbol
brca2
Name
(RefSeq) breast cancer type 2 susceptibility protein isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03440
Homologous recombination
schu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122879014 (brca2)
03460 Fanconi anemia pathway
122879014 (brca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122879014 (brca2)
03036 Chromosome and associated proteins [BR:
schu03036
]
122879014 (brca2)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122879014 (brca2)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122879014 (brca2)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
122879014 (brca2)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
122879014 (brca2)
FA (Fanconi anemia) pathway
Downstream FA components
122879014 (brca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
BRCA2_TR2
Tower
Motif
Other DBs
NCBI-GeneID:
122879014
NCBI-ProteinID:
XP_044058560
LinkDB
All DBs
Position
LG7:24040616..24056463
Genome browser
AA seq
3059 aa
AA seq
DB search
MDLPSKNMYDTFRDEIWKELGPLDPDWFEALTAQTFTNEENVSYQDDLCANLEGNFKTPF
DKTAVDSQLFSTPKVFRRCQVVSPETENEQSFTAEQEKETLPWMATHSPYLFPMSKEGVP
GAKYGGIQPQSQDCFDMLHTPQTSPVSNAKHISESLGAQIHPDMSWTSSLNTPSAVPSTL
ILSKTDESPCPVSASADKNVVFVRKLFPSLSNASRVASPKNNDMPTVHQGIVSPEASQNP
ESHDSPQSSLNQSDSVWRQKLPDAIEDGEIRSTVASVLDGAENVLSIFFTNSSSALRKVK
TDRIKRKQIIPTKERGCSSTDISTTNNAASSEQRTANQEHSRLPSSPPVKTGEIGFTQWS
PLSLSEIPPSTVDTSCHDNSPATQVESNILTEQLQSDSDSGQLVRPPMKLTNFGFTKKKR
TFVYTVETLKPQVQGKETQSQKMDSSPGIPDSGQEVNVKQLGKVPDEADCCSIGKHEMQK
QGNLTEENLPPSVQAKVQDFDMSQLCRDFAQDFSQMSDLGKLSKVAEDMPQNGFSPSACL
SAMKREKQKARQANLHHDCDGVSNRRHVSTTNQKNSINEGATSDSGFQSAVADITHVTAS
SFVLPSSENNGQSQQWTGFKTIIHRTTHFPSTNKGNGKANLDDILQEAETDAKLSSAIKE
SQTMGPGKESELHIKSTSTQLSSSAKGTVDSINCIPLNGPVLGSLPEKTVVFLPSVHASG
FKTASNKGIHISSANLERAKLLFEETKEERTFSDQLIKSTHDNKAEISSPGSVKNTTSNS
NQPPTSSEKCVDISCQLTASQKADVTELCTLMEEADSQFEFTPFKTAKLKQHCQDNTTSP
TKVDKELDPDFLMGIDFDDSFSSDAEKHLALTAMHDKMTLVSDGKTNRETSITSKSTGFP
LSGAMKKENFSTEDVSSSSKHISEGSSIMSAEHKSCDKAGPTETSKLENKNPLMLGVGFK
TAGGNVLRISKKCLSKARALFADLEENLVTSEKSPDKQSSESDAKTQHKPSVDNHTGNLL
HHKEDNSQFTSYGDDTGGRIQGCFSNMKESVCSVRQVTGIRDEDATKCFKNSTMETTTCQ
SGFQMANGKGISISAKSMQEADAFFKDCDVKDSNAGMSVNHKKSIEPLPGSVSHKKNLLK
FKNVQRTKVNFSEEPSNEFENVNDGPAACHTEVVQNNVEIHNFGFKNTSALTNATSFHEN
PFSIAKALSSPSCTTSKNIGSSAINEMANGGGFCTASGKKVSMSADAMKKAECLLNEFHT
LEDTNKQLKKKGDALRTGHLTNQIQVSPSKNDGFQTASGKGVAISSAALKKAKLLLSECD
EDEIGVRPTHSKIPVHGPPPRNSGFLAASGKPVALSAEALQMTKALFSDISFSVEIPPVS
DTSNIDKKQDDAENTERMHCGFSTAGGTKVHVSEKNLLKAKYILKEFDEGSISAKAMQEA
DVFFKDCDIMDGNDGMLVKHEKSIAHVSESGSEKKNLSKSKQDQRVTNISEEPGSGRTEF
ENVTVGTIVNHEKMLHRDDVEIHKDVFKNTLGSTKAVSLHGNPSLMAKPLSSLLCTSKNI
GSSAINELSNGGGFCTASGKKVSVSEDAMTKAKSLLNESATFEETNKQLKQNEDTLPPQN
GGFQTASSKGVAISSAALMKTEILSECEGVEDKTHSKISVHGPPPRNSGFLAAGGKPVAF
STEALQKAKALFSDISFSAEIPPVSHTWNNDKKHKDARNDTEKIHCGFTTAGGAKVHVSQ
KNLFKAKNLLKEFADECHDSNSYSTRPRDTEKTDLSKLKNVKRTSNYNLTSASDKDMPTK
EIVPHVVKPLTSLQETDHENKTLQSSSARGCIFSKDKAPTDAFKFKEVKITPLRVGNLHD
SPGEEMSSVLDYEINRISSSEGSKVNGTEESSVLNFQLLNLRGCTETQQKFLAQEALDCT
KALLEDESLAGQSLSMTSENVSLQDYPKSSNRSLEEQKRTGKRLVKDTDMTGQPPLKRRL
LEEFDRTVDGPRDSTLHPEKSSPNGVMKDRRVFKYSVALHPNITRPHRSGKNYVETTLQK
TTPIQSSTPNSRSTHSKMPAFVPPLFKNAKTESRKNTVLKDNIRTPSAFVPPFKKQRTIV
QENFSKPREEEEEATHHHLLITPFNSNTYVPPTKKTQSTKDVSGIKSKYIQSVALTDTTN
DNLMNNQNLPVGCGSEDSAAEASRVDDPLSRSQDMFQDLHSLELARDMQDMRIRKKKRQT
IRPLPGSLFLTKTSGVLRISLKTAVNGQPPARYTPKQLYGHGVHQHVYEITSENAESFRF
SLQQFIKQEAFIDGGGIQLADGGWLIPSNDETAGKEEFYRALCDTPGVDPKLISEEWVYN
HYRWIVWKQASMERSFPQTMGSLCLTPEQVLLQLKYRYDIEVDHSRRPALRKIMERDDTP
AKTLVLCVCGVVSMGHSPKRQSFSDTKTPQGADGKVENPSAVIWLTDGWYAIKAQLDEPL
TAMLHKGRLAVGGKLIVHGAQLMGSQDACSPLEAPESLMLKICANSSRPTRWDAKMGFHR
DPRPFLLPVSCLYSNGGPVGCVDIIILRSYPIQWMERKPDGGVVFRSVRAEEREARRYNS
HKQKAMEILFAKIQAEFEKEEKGNKPQRRRQTVSRQDIASLQDGEELFQAVGDDPSYLEA
HLSEQQLETLHAYRHSLMEKKQAELQDRYRRALENAENSEGGCLKRDVTPVWRLCFADSL
GQPGSVYQLNLWRPSSDLQSLLKEGCRYKVYNLTASDGKKHGGSTTVQLTGTKKTQFQDL
QASQEWLLTCFHPRVSSPFVDLQNPEFQPLCGEVDLTGYVISIIDGHGSSPGFYLTDGKL
NFVKVRCFSSLAQSGLEDVVKPLVLLALSNLQLRGQSTSPTPVVYAGDLTVFSTNPKEVH
LQESLRQLRNLVQGQENFFLTAEEKLSHLVKSDGLSSISSPALQTRTPASTTDRRQDTRT
SVTFQQPVRSFGSFTPVGRNPPAANGSTEKDPSSLKRRRALDYLSRIPSPPPLSQLGSVA
SPCVNKTFNPPRRSGTPSTLKTVQTPARKPVDSPMEDEWVNDEELAMIDTQALLVGDLL
NT seq
9180 nt
NT seq
+upstream
nt +downstream
nt
atggatttaccctcaaaaaacatgtacgacacattcagagatgaaatctggaaagagctg
gggccactggaccccgactggtttgaggcactgacagctcaaacgttcactaatgaggaa
aatgtctcttatcaagatgacctgtgtgctaacctagagggaaattttaaaacacctttt
gacaaaactgcagtagacagtcagctgttttcaacccccaaagttttcagacgctgtcaa
gttgtgtcacctgaaactgagaatgagcagtcgtttactgctgaacaagaaaaagaaaca
ttgccatggatggcaacacacagtccatatttgtttccaatgtcaaaagagggggtccca
ggtgcaaaatatggaggtatccagcctcagagtcaggactgttttgatatgcttcatacc
ccacaaacatccccagtcagcaatgccaagcatatatctgaaagtcttggtgcacagatt
catcctgatatgtcatggaccagttctctgaataccccatcagcagtaccgtccactctg
attttatctaaaactgatgagagtccctgcccagtgagtgcttctgcagacaaaaatgtc
gtttttgtacggaagcttttcccttctctttcaaatgcatccagagttgcgtcacccaaa
aacaatgatatgcctaccgttcaccaaggtattgtttcccctgaggccagtcagaatcca
gagtcccatgactctccccaaagttcactgaatcagagtgacagtgtttggagacagaag
ctaccagatgctattgaggatggagaaatccgcagcaccgtagcaagtgttcttgatgga
gctgaaaatgttctctccatatttttcaccaacagtagttcagcactgagaaaagtgaaa
actgacagaatcaaaagaaagcaaatcattccaacaaaagaacgtggctgcagctctaca
gacatctcgacaacaaacaacgctgcatccagtgaacagagaacagccaatcaggaacat
agcagacttccctcatccccaccggtgaaaaccggagaaattggattcacccagtggtct
ccattgagtttatctgaaattccccctagtactgtagatacttcttgccatgataatagt
cctgccacacaagtggaaagcaatatattaacagaacaactgcagagtgactctgattct
ggccagctagtcaggccacctatgaaactcacaaacttcggatttactaagaaaaaaaga
acctttgtttacactgttgagactttgaaaccacaagttcaaggaaaggaaacacagtct
cagaagatggactcatcaccagggattccagattctggacaagaagtgaatgtgaagcag
ttggggaaagtcccagacgaagcagactgttgcagtattgggaagcatgagatgcaaaaa
cagggaaatctcactgaagaaaatctacctccctctgtacaagcaaaagtccaggatttc
gatatgtcacagctttgcagagattttgcacaagacttcagtcaaatgtcagacctgggt
aaactgagtaaagtagcagaggatatgcctcaaaatggcttctctccatcagcttgtctg
tcagccatgaaacgagagaagcagaaagcaaggcaagcaaaccttcaccatgactgtgat
ggcgtcagtaacagaagacatgtttctaccactaatcaaaagaactccatcaatgagggc
gcaacaagtgacagtggattccagtctgctgttgcagatatcactcacgtgactgcatcg
tcatttgttcttcccagctcagagaacaatggtcaaagtcaacagtggactggttttaaa
actattatccacaggactactcattttccatctacaaataaaggaaatggaaaagcaaat
ttggatgatattttacaagaagctgaaactgatgccaagctgtccagtgcaataaaggaa
agccagacaatgggtcctggcaaagagagtgagttgcacataaagagcacatcaacacaa
ctatccagcagtgcaaaaggaactgtcgatagcattaattgcattccacttaatgggcca
gttcttggcagtctgccagagaaaacagtagtttttcttccttccgtccatgcatcagga
ttcaagactgcttctaataagggcatacacatttcctcagccaacctggagagagccaag
cttctttttgaagagactaaagaggaaagaacttttagtgatcagctcataaaatctacc
catgacaataaagctgaaattagcagtcctggatcagtgaaaaatacaacctctaactca
aaccagccacctacttcaagtgaaaaatgtgtggatatcagttgccagttaacagcttca
caaaaagctgatgtgactgagctgtgcactctcatggaagaagcagatagccagtttgaa
tttacaccgttcaaaactgcaaagctgaaacaacattgtcaagataataccacctctccc
acaaaagttgacaaagaacttgaccctgattttctaatgggtatagattttgatgacagt
tttagttcagatgctgaaaagcacctggcactaactgcgatgcatgacaaaatgacctta
gtttcagatggtaaaactaatcgtgaaacatccatcacaagtaaatccacaggttttcca
ttgtcgggtgcaatgaaaaaagaaaatttctctactgaagatgtgtcttcctcttcaaag
cacatctctgaaggcagcagtattatgtcagctgaacacaaaagttgtgacaaagctgga
cccactgaaacaagcaagttggagaacaaaaatcctttgatgcttggtgtgggatttaag
acagcaggaggaaatgttttgagaatttcgaaaaagtgtctgagcaaagctagagctttg
tttgcagatttagaggagaatcttgtgacaagtgaaaaatcacccgacaagcaaagtagt
gaaagtgacgctaaaacacagcataagcccagtgtggataatcacactggtaacttgttg
catcataaagaggataattcacagttcaccagttatggtgatgatactggagggaggatc
cagggctgtttttcaaacatgaaggagtctgtctgttcagtcagacaggtcacaggcatt
agagatgaagatgctacaaaatgttttaaaaacagcacaatggaaacaaccacgtgtcaa
agtgggttccagatggccaatgggaaagggatttctatttcagcaaaatctatgcaagag
gcagatgctttcttcaaagactgtgacgttaaggacagtaatgctggtatgtcagtaaac
cataaaaagagcatagaacccttgcctggaagtgtcagtcacaagaaaaaccttctgaaa
tttaaaaatgttcaacggacgaaagtaaacttttctgaagaaccatccaatgagtttgaa
aatgtgaatgatggaccagctgcatgccatacagaggttgtacaaaataatgtggagatt
cacaattttggttttaagaatacatcggctttaacgaatgctacttctttccatgaaaac
ccattttctattgcaaaggcactctcatctccctcatgcacaacatcaaagaatattggc
tcctctgccatcaatgaaatggccaatggtggcggattctgtacagccagtggaaagaaa
gtatccatgtcagctgatgcgatgaaaaaagcagagtgtcttttgaatgaattccataca
cttgaggacacaaacaaacagctgaagaaaaaaggagatgctttaagaacaggtcatctc
accaatcaaattcaggtttcaccatctaaaaatgatggctttcagacagccagtggcaaa
ggagttgctatttcatctgcagctctcaagaaagcaaaactgttgttgagtgaatgtgat
gaggatgaaatcggtgtaagaccaacacattccaagattccagttcatggtccaccgccc
aggaatagtggatttcttgcagccagtggtaagccagtggcactttcagctgaggccctc
cagatgactaaagctctcttcagtgacatcagtttcagtgtagagatcccacctgtttca
gacacaagcaacattgacaagaaacaagacgatgctgaaaatacagagagaatgcattgt
ggtttctcaactgcagggggaacaaaagtccatgtgtcagagaaaaatctgttgaaagca
aaatacattttgaaagagtttgatgaagggtctatttcagcaaaagcaatgcaagaagca
gatgttttcttcaaggactgtgacattatggatggtaatgatggcatgttagtaaaacat
gagaaaagtatagcacatgtgagtgaaagtggcagcgagaagaaaaacctttcaaaatct
aaacaagatcaaagggtgacaaacatttctgaagagcctggaagtggacgcaccgagttt
gaaaatgtgactgtgggaacaattgtaaaccatgaaaagatgctgcatcgtgatgatgtg
gagattcataaagatgtttttaagaacacactgggttctaccaaagcagtttctttacat
ggaaacccatctttgatggcaaagccactttcttccctgttgtgcacatcaaaaaacatt
ggttcctctgccattaacgaattgagcaacggtggtggattctgtacagccagcgggaaa
aaagtatctgtatcagaagacgcaatgacaaaagcaaagtctctattgaatgaaagtgct
acatttgaggaaacaaacaaacaactgaaacaaaatgaagacactttgccaccacagaat
ggtggatttcagacagccagtagcaaaggagttgctatttcatctgcagctttaatgaaa
acagaaattttgagtgaatgtgaaggagttgaagataaaacacattctaagatttcagtt
catggtccaccacccaggaatagtggatttcttgcagcaggtggtaaaccagtagcattt
tcaactgaggccctccagaaggctaaagctctcttcagtgacatcagtttcagcgcagag
atcccacctgtttctcacacatggaacaatgacaagaaacacaaagatgctcgaaacgat
acagaaaaaatacattgtggtttcacaactgcagggggagcgaaagtccatgtgtcacag
aaaaatctctttaaagcaaagaacctgctgaaagaatttgctgatgaatgtcatgattca
aattcatactcgacaaggccacgtgacacagagaagacagatctatcaaaattgaaaaat
gtgaaaagaacgtcaaattataatctcacctcagccagtgacaaagacatgcctactaag
gaaattgtccctcatgtagttaaacctttaacctctttgcaagagactgaccatgaaaat
aaaactcttcaaagttcaagtgcacgtggttgcatttttagcaaagacaaagcacctaca
gatgcatttaagtttaaagaagtcaaaattaccccattaagggtgggcaacctccatgac
agccctggagaggaaatgtcaagtgtgttggactatgaaataaatcggataagcagcagt
gagggatctaaggtcaacgggacagaagagtcttcagttcttaattttcagttgcttaac
cttagaggctgcactgaaacccagcaaaagtttcttgcccaggaagctctggactgcact
aaagctttgttagaggatgaaagtctagctggccaaagtctctcaatgacttcagaaaat
gtatcactgcaagattaccccaaatccagcaacagatctttagaggaacaaaaaagaaca
gggaaaagactggtaaaagacacagacatgactggtcagcctcctctgaaaagacgatta
ctggaagaattcgacaggactgttgatggtccaagagattcaacactccatcctgaaaaa
agcagtccaaatggtgtgatgaaagacaggagagttttcaagtacagcgtcgctcttcat
ccaaacatcacaaggccacacaggagtggaaaaaactatgtggaaaccacattgcaaaag
accaccccaatacaatcctcaaccccaaacagcagatcaacacattccaagatgccagct
tttgttccgccattgttcaagaatgcaaagacagagagtcgcaagaacacagtgctcaag
gacaacataagaacaccttctgcatttgttcctccattcaaaaaacaaagaactattgtc
caagagaacttctctaaaccacgggaggaggaggaggaagctacacaccaccatctctta
ataacaccctttaacagcaacacttatgtaccacccactaaaaaaacacaaagcactaaa
gatgtatctggtattaaaagcaaatacattcagagtgtggccttgactgacactacaaat
gataatctgatgaataatcaaaacctgcctgttggctgtggatcagaggactctgctgca
gaggcatcacgtgtggacgacccattgtctagaagccaagacatgttccaggatcttcat
agcttagagctggcacgagatatgcaagacatgaggatcaggaaaaagaagcgccagacc
attcgacctttgccgggcagtttgtttctaacgaaaacctcaggagtgttgaggatatca
ttaaaaactgcagtaaatggacagcctcctgcaagatacaccccaaaacagctgtatgga
catggagttcaccagcatgtgtatgagatcaccagtgagaatgcagaatcatttcgcttc
agtttacagcagtttatcaaacaggaagcatttatagacggaggtggtattcagcttgct
gatggaggatggctgatccccagcaatgatgagactgcaggaaaagaagagttctataga
gcgttatgtgacaccccaggtgtggatcctaaactgatcagtgaggagtgggtgtacaat
cactaccgatggattgtgtggaagcaggcctccatggaaagatcatttccacaaacgatg
ggcagcctctgcctcaccccagagcaggttctcctgcaactgaagtacagatatgatata
gaggtggaccacagccgcaggccggctctgagaaagatcatggaaagggacgacactcca
gccaagaccctggtcctctgtgtttgtggggtcgtctccatgggtcactccccaaaaaga
cagagtttcagtgacaccaagactccccaaggtgctgatggcaaggttgaaaacccatct
gcagttatttggctaacagatggatggtacgccattaaagcccagctggatgaacctttg
actgccatgcttcacaaaggtcgactggctgtcggtgggaagttgatcgtccatggggct
cagctgatgggatcacaagatgcttgctcccctcttgaggcacctgaatctctcatgtta
aagatttgcgccaatagcagcagacccacacgatgggatgctaaaatgggatttcacagg
gatccacggccattcctgcttcctgtctcctgtttatacagcaatggaggaccagtagga
tgtgtggacattattatactgagaagctaccccatacagtggatggagaggaaaccagat
ggcggcgttgtgttccgttctgttcgcgcagaagagagggaggcgagacgatacaacagc
cacaaacaaaaagctatggagatcctatttgccaagattcaagctgaatttgaaaaggag
gagaaaggtaataaacctcaacgtagaagacagacagtcagtcgtcaggatattgcaagt
ctgcaagatggagaggagctctttcaagcagtgggggatgacccatcttacctcgaggct
catttgagtgaacagcagttggagactctacatgcctacaggcattctctgatggagaag
aagcaggctgaattgcaggatcggtacagacgagctttagaaaatgcagagaacagcgaa
ggtggctgtctcaagcgagatgttacacctgtgtggagactctgctttgctgactccttg
ggccaacccggcagtgtgtaccagttgaacctttggcgaccttcctcagatcttcagtct
ttactgaaggaaggctgtcgatacaaagtctataacctcaccgcttcggatggaaagaaa
catggtggaagcacaactgttcagctgactgggacaaagaaaacacagtttcaggacctg
caggcttctcaggaatggttattaacatgttttcacccgagggtctctagcccttttgtg
gatcttcaaaatccagaattccagccactgtgtggagaggttgatctcacaggatatgtc
atcagtatcatagatggacatggttcctctcctggattttatttgaccgatgggaaactg
aactttgttaaagtgcgctgtttcagcagcttggctcagtcgggcttggaagatgtggta
aaaccgcttgtcctcttggctctgagcaacctgcagctgagaggtcagtccacatctccc
actcctgttgtgtacgctggagatctgactgtcttctcaacaaaccccaaggaagttcat
ctacaggaatctctccgccaactcagaaacctggtccagggtcaggagaacttctttctt
actgctgaagagaagctttcacatttagtcaaatctgatgggctgagctccatctcctct
ccagctctgcaaacaagaaccccagcttctacaacggacagaagacaagacacaaggaca
agtgtgacatttcagcagccagtcagaagctttgggtccttcacacctgtcggcaggaac
cctcctgcagcaaacggttcaacagagaaagaccctagcagcctgaagaggaggagagct
ctggactatttgtctcgtatcccatctccaccacctctctcccaactgggctcagtcgct
tctccatgtgtaaataagacattcaatccccctcggaggtctgggacacctagcacttta
aaaactgtacagactccagctcgcaaacctgtcgattcaccgatggaggacgaatgggtg
aatgacgaggaactggctatgattgatactcaggcattgcttgttggtgatttactgtag
DBGET
integrated database retrieval system
