Siniperca chuatsi (mandarin fish): 122879845
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Entry
122879845 CDS
T08948
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04120
Ubiquitin mediated proteolysis
schu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
122879845 (syvn1)
04120 Ubiquitin mediated proteolysis
122879845 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122879845 (syvn1)
Enzymes [BR:
schu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122879845 (syvn1)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
122879845 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
FANCL_C
Motif
Other DBs
NCBI-GeneID:
122879845
NCBI-ProteinID:
XP_044060262
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All DBs
Position
LG8:23411990..23421010
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AA seq
639 aa
AA seq
DB search
MVRAALVTATSLALTGAVVAHAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISCIFHLRVLSLMGLLGVLDFLFVNHACHSIITRGASVQLVFGFEYAI
LLTMVLTTFIKYLLHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYIAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNNNQTPAPAQAPPPAPAAPANAP
AAPPANVAPGMLPGFPPGIFPFWGPFPAVPPPPPPPHAAAAAGPGASDAPQSSTEATQAA
GTSQPTSSTADTAAAAAAAAPGSAIPGFPFSFPPPPFPTAPWLPMPPPPPFVSSMPPPPP
SLSRLSEEELRELEAEGRRGLEARLQCLQNIHTLLDAAMLNIHHYLSTVATLTPPRAEGS
AGEASGTNNAASSPAAGSSVDSPSQEKDSPSSEQVDGAVSSQPADSTSTASDTESKEKMD
EGALLVGDEDGEPNAAELRRRRLRKLETATSSSSPPPDN
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggtacgagcagccttggtgactgccaccagtctggcactgactggggctgtggtggca
catgcttacttcctcaaacaccagttctacccaactgtggtctacctcaccaagagcagc
ccgagcatggcggtgttgtacattcaggcctttgtgttggtgtttctgctgggaaagttc
atgcggaaggtcttttttggacagctacgggctgcagaaatggagcatctcattgagcgc
tcctggtacgcggtgaccgagacgtgcctggcattcactgtgttcagggacgacttctcc
cctcgctttgtcgccctcttcaccctcctgctctttcttaagtgcttccactggctggct
gaggaccgggtggactttatggagcggagtccaaacatatcctgcatttttcacttgaga
gtattatctctcatgggtctgctgggtgtcctggacttcctgtttgtcaaccatgcctgt
cacagcatcattacccgaggagcctcagtccagcttgtttttggatttgagtatgccatc
ctgctgaccatggtgctgacgaccttcattaagtaccttctgcacactgttgacctgcag
agtgagaatccctgggacaacaaggccgtctatatgctctacacggagctcttcacaggt
ttcatcaaagtgctcctgtacattgccttcatgaccatcatgataaaggtccacaccttc
cccctgtttgccattcgccccatgtatctggctatgaggcagttcaagaaagctgtaaca
gatgctataatgtctcggagagccatccgtaacatgaatacactatacccagatgctact
cctgaagatctgcaggcctctgacaacgtctgtatcatttgtcgagaggaaatggtcacc
ggagccaagaaactaccttgtaatcacattttccactccagctgcctgcgctcctggttc
cagaggcagcagacctgccctacctgtcgcatggacgtcctccgtgcatctaataacaat
cagactccagccccggcccaggccccgccccctgctcctgcagcccccgccaacgccccc
gcagccccacctgccaatgtggccccaggcatgttaccaggttttcctcctggcatcttc
cccttctggggtcccttccctgcagtgcctcctcctcctcctcctcctcatgctgcagca
gctgcaggtcctggtgcaagtgatgctccacaaagcagcacagaggctacacaggcagct
ggtaccagccagcccacctcgtcgactgcagacaccgctgcagctgcagctgctgctgct
ccgggatcagcaatcccaggcttccccttctccttcccccctcctcccttccccactgca
ccatggctgcccatgccaccacctcctccatttgtgtcatcaatgcctcctcctcctccg
tctctgtcgcggctgtcggaggaggagctgagggagctggaggcagaaggccgacgtggc
ctcgaggccaggctccagtgtctccagaacatccacaccctgctggacgccgccatgctc
aacatccaccactacctcagcaccgtcgccacactcactcctcctcgggctgagggcagc
gctggagaagccagtgggacaaacaacgctgcttcatctcctgcagctggcagtagcgtg
gacagtcccagccaggagaaggactctcccagctctgagcaggtggacggagcagtgtcc
tctcagccagccgactctacttctactgcctcggacacggaaagcaaagaaaagatggac
gaaggcgcgttgttggtgggggatgaggacggggagcccaacgccgctgagctgaggcgc
cgccgccttcgcaagctagagaccgcaacatcatcatcgtcaccccctccagacaactga
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