Siniperca chuatsi (mandarin fish): 122879879
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Entry
122879879 CDS
T08948
Symbol
polr2b
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03020
RNA polymerase
schu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
122879879 (polr2b)
09124 Replication and repair
03420 Nucleotide excision repair
122879879 (polr2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122879879 (polr2b)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122879879 (polr2b)
Enzymes [BR:
schu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
122879879 (polr2b)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
122879879 (polr2b)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
122879879 (polr2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
122879879
NCBI-ProteinID:
XP_044060319
LinkDB
All DBs
Position
LG8:complement(10923..33276)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDNQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPTRETCQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFIGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtacgaccaggacgaagataatcagtacgatgaggacgatgatgaaatcactccagat
ttgtggcaggaagcgtgctggatcgtcatcagctcttattttgacgagaagggtctggtg
cgtcagcagctggattcgttcgatgagttcatccagatgtctgttcagaggatcgtggag
gacgctccacccatcgacctgcaagctgaagctcagcacacctcaggagaggtggaggag
ccgcctcgttacctgctgaagtttgagcagatttacctgtccaagcccacccactgggag
agagatggagcgccgtctcccatgatgcccaacgaagcccgactacggaacctcacgtac
tcggcccccctttacgttgacatcactaagaccatcataaaagagggggaggaccagctg
cagactcagcaccagaagaccttcattggtaaaattcccatcatgcttcgctccacctac
tgtctgctgagtggcctgacagaccgagacctgtgtgagcttaacgagtgtccgcttgac
cccggaggttatttcatcatcaacggctccgagaaggtgctgatcgctcaggaaaagatg
gccaccaacacggtgtacgtgtttgccaagaaggactcaaagtacgcctacacaggcgag
tgccggtcctgtttggagaactcgtcccgtcccaccagcaccatctgggtcagcatgatg
gccagaggaggacagggagtgaagaagagtgcgattggtcagaggatcgtgtccacgctg
ccttacatcagacaagaagttcccatcatcatcgtgtttcgagcgctgggcttcgtgtcg
gacagagacatcttggaacacatcatctacgacttcgacgaccccgagatgatggagatg
gtgaagccgtctctggacgaagcgtttgtgatccaggagcagaacgtggctttaaacttt
attggttccagaggagcgaaacccggcgtgacgaaagaacgaagaatcaaatacgcaaaa
gaagttctgcagaaagagatgctgccacacgttggagtcagtgacttctgtgagaccaag
aaggcttacttcttagggtacatggtccacaggttgttgctggctgctctcggcagacga
gagctggatgacagagatcactacggcaacaagaggctggaccttgccgggccgctattg
gcgttcctgttcagaggcatgtttaagaacctgctgaaggagatccggatttatgctcag
aagttcatcgacagaggaaaagacttcaatctggagcttgccattaaaacccggatcatc
tcagacggcctcaaatactcgctggccactggaaactggggcgacgtgaagaaggctcac
caggcccgagccggagtgtcacaggtgttgaaccgtctgaccttcgcatccaccctgtcc
caccttcgccgagtcaactctccaatcggcagagatggcaaactggcaaaacccagacag
ctgcacaacacgctgtggggaatggtttgtccggccgagacgcccgagggtcatgctgtg
ggtctggtgaagaacttggccctcatggcctacatctctgtaggctctcagccgtctccc
atcctggagtttctggaggaatggagtatggagaatctggaggagatctcccctgctgct
atcgcagatgccactaagatctttgtgaacggctgctgggtcggaatccacaaagatccc
gaacagctgatgaacacactgaggaaactccgcagacagatggacatcatcgtgtccgag
gtgtccatgatcagagacatcagagagcgtgagatcagaatctacacggacgccggacga
atctgccgaccgctgctgatcgtcgagaaacagaaacttctgctgaaaagacgacatatc
gaccagctgaaggagagagagtacaacaactacagctggcaggacttggtggcgagcggc
gtggtggagtacatcgacactctggaggaagagactgtgatgctcgccatgacccctgat
gacctccaggagaagggcgtggcgtattgctccacctacacacattgtgagatccacccg
tccatgattctcggagtctgtgcttccatcatccccttccccgaccacaaccagtctccc
aggaacacataccagtctgctatgggtaaacaggccatgggtgtctacatcaccaacttc
catgtacgaatggacacgctggctcacgtgttgtactaccctcagaaaccgctggtcacc
acccgatccatggagtacctgcgcttcagagagctgcccgcaggtatcaactccatcgtg
gcgattgcctcgtacacgggatacaatcaggaggactctgttatcatgaacaggtcggcc
gtggatcgaggcttcttcaggtctgttttctatcgatcctacaaagagcaggagtctaag
aagggttttgatcaggaggagatctttgagaagccgacacgtgaaacctgtcagggtatg
agacacgccatctatgacaagctggacgacgacgggctgattgcgcccggcgttcgtgtc
tccggcgaggacgtgattatcgggaagacggtgacactgccggagaacgacgacgagctg
gacagcaccaaccggcgctacaccaagagagactgcagcacctttctgagaaccagcgag
accggcatcgtggaccaggtgatggtgactctgaaccaggagggctacaagttctgcaag
atcagggttcgctccgtccggattcctcagatcggagacaagttcgccagccgacacgga
cagaaaggaacctgtgggatccagtacagacaggaggacatgccgttcacctgcgaggga
atcacacctgacatcatcatcaaccctcacgccatcccgtccagaatgacagtcggccat
ctcatcgagtgtctgcagggcaaggtttctgcgaacaaaggtgagatcggcgacgccacg
ccgttcaacgacgccgtcaacgtgcagaaagtgtcgaacctgctgtctgaatacggatac
cacctgagaggaaatgaggttctgtacaacgggttcacgggaaggaagctgacgtctcag
atcttcatcggcccaacttattatcagcgtctgaagcacatggtggacgataagatccac
tcgagggcccggggccccgtccagatcctcaacaggcagccaatggagggacgatcacgt
gacggcgggctgcggttcggggagatggagcgtgactgtcagatcgctcacggagcggct
cagttcctcagagaacgcctgttcgaggcctctgatccgtatcaagtccacgtgtgtaac
ctgtgtggactgatggccatcgccaacacacggacgcacacgtacgagtgtcgaggctgc
cgcaacaagacacagatctctctggtccggatgccgtacgcctgtaagcttctcttccag
gagttgatgtctatgagcatcgctcctcgtatgatgacgtcatag
DBGET
integrated database retrieval system
