Siniperca chuatsi (mandarin fish): 122880021
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Entry
122880021 CDS
T08948
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin-10
KO
K16499
protocadherin delta 2
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
schu04515
]
122880021 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
schu04515
]
Cadherins
Protocadherins
122880021 (si:ch73-233f7.1)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
122880021
NCBI-ProteinID:
XP_044060675
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Position
LG8:complement(16277370..16284259)
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AA seq
1004 aa
AA seq
DB search
MDHRLSRGSWVPVTGLVICLLLCACVVDLVLAQIRYSIPEELEHGAFVGNIAEDLGLDVA
KLSARRFRIVSGAKKQYLEVNLENGILFVNEKIDREELCERSPSCFLHLQVVIENPLELY
RVEVEILDVNDNSPSFPWSEFNIDITESAAPGSCFPLESAQDQDVGTNSLRSYQLSANEH
FVLNIQTRNDGSKFAELVLDTPLDREQQKKHEMVLTAFDGGSPERSGTALITITVLDAND
NVPVFDRSVYRASLVENAPRGTLVLKLNATDLDEGSNGEVTYAFSGHAPLKVRELFNVDP
YTGEIRVKGVVDYEKASVYELYVQAKDRGPSAVAVHSKVLVDILDVNDNAPEVILTSVST
PVQEDAPPGTVIAVISVMDRDSGENGNVDCQIPSNVPFQLHSSFKNYYTLVTSEFLDREA
VSEYNITLTVRDLGSPSLSTRKTILVQVSDINDNPPRFSQPSYTVYVTENNAPGASICSV
TAFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQILVQA
QDAGFPPLASNVTVNVFVLDQNDNAPVIVSPLPKNGTVATDVVPRSVDAGYLVTKITALD
ADAGQNSRLSYQVLQATDPGLFSVALYTGEIRTIRRLVEKDATRQRLVILVKDNGQPPLS
ATASIVLTVVDSVPESLSDFGDLTLSPQPPSNLALYLIVSLSTISLIFLVAIIVLAAVKC
YKDRETLSGYNLPPFACCCCGGFQSEPPPEVFKKSNLNLQISSTAKVPTNCMEVNGSSSL
SQSYCYKVCLTPESAKSDFMFLKPCSPGSTPRNNEAKSGENSWNAQSRSASVNNGATTPN
ELKQPNTDWTLTKNQNSSIKSYNSINMDGTLMRKAMHADPENYVTSMAPGQYWTWGTHMR
GMKDYKMSPSTSGVPSRPWTPRCTPPPQQQQPSIPSHPHPHPPPDYHHNVYIPGTPSGFC
TLRPAVQRSELDVHNSFSTFGKKRRLQMSPQGEAAIINNDLYND
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atggatcacagactctccagaggcagttgggtaccggtgactgggctggttatatgtctg
cttctgtgtgcgtgtgtagtggacctggttcttgcgcaaattcggtactccattcccgaa
gagctggagcacggagcttttgtgggcaacatcgccgaagacctgggcttggatgtggcc
aagctgtcagcccgtcggtttcgtatagtgtccggagcaaagaagcagtatttagaagtg
aacttggagaacggcattctcttcgtcaacgaaaagatagacagagaggagctgtgtgaa
cgaagcccgagctgctttttacatttgcaagtggtcattgaaaacccattagaattgtac
agagtggaagtggagattttagatgtgaatgacaactcccccagtttcccatggagcgag
tttaatattgacattacagagtcggctgcgcccggctcctgtttcccgttagagagcgca
caggaccaggacgtgggcaccaactctctgcgctcctaccagctaagcgcaaacgagcac
ttcgtactgaatattcagacgcgcaatgacggaagcaagttcgctgagctcgtgctggac
accccactggaccgggaacagcagaaaaagcacgaaatggttctgactgcctttgacggg
gggtcaccagaacgctctgggacagcactgataactattacagtgttagacgcaaacgat
aacgttcccgtatttgaccgctcagtttaccgggcgagcctggtggagaacgcaccgagg
gggacgctggtgctgaagctaaacgccacagacctggatgagggctcgaatggggaggtg
acctacgcgtttagcgggcacgcacccctcaaggtgcgcgaactgttcaacgtggacccg
tacacgggtgaaatccgagtgaagggcgttgtggactatgagaaagccagtgtatatgag
ctgtatgtgcaggcaaaagacaggggaccctcggctgtggcagtacacagtaaagtgctg
gtagacatcctggatgtgaatgacaacgcgcccgaagtcatcctcacatcagtgtccact
cccgtccaggaagacgcgccaccgggcacggtgatagctgttatcagtgtcatggaccgg
gactcgggagagaacgggaatgttgactgtcaaattccgagcaacgtcccctttcagctc
cattcatcttttaaaaactattatactttggtgacaagcgagtttctggacagggaagcg
gtgtccgagtacaacatcaccctcacagtccgagacttgggctctccctcgctctccact
aggaaaacaatcctcgttcaagtgtctgacattaatgacaaccccccgcggttctctcaa
ccttcatacacagtttatgtgaccgagaataatgcccccggcgcttccatttgctctgta
actgcattcgaccccgattctaaccagaacgcctatctgtcttattctattctcgagggt
cagattcagggcatgcccgtgtccacttatgtctcaatcaactctgacaacggaaatatc
tacgcactgcgctcttttgattatgagcaacttagaaactttcagattctggttcaggcg
caagacgctggtttcccccctctcgccagtaatgtcacagtgaacgtctttgtcttggac
cagaacgacaatgcccctgttattgtatccccgctgcccaagaacggcaccgtggccaca
gacgtggttccgcggtcagtagacgctgggtatctggttaccaaaataacagcgttagac
gcggacgcggggcaaaactcccggctgtcctatcaggtgttgcaggctacagacccgggg
ctgttcagtgtggctctgtacacgggcgaaatcaggactattcgccggctagtggaaaaa
gacgcaacaaggcaaagactggtaatattagtcaaggacaacgggcagccgccgctctcc
gccaccgcctccattgtcctcacagtggtagacagcgtgcccgagtcgctgtcagatttc
ggagacctcacactcagcccacagcccccctcaaacctcgctctctacttgatcgtgtca
ctgagcacaatatctttaatattcctggtggctattatcgtgctggctgctgtcaagtgc
tacaaggacagggagaccctcagcgggtataacctccccccgttcgcctgctgctgttgc
ggggggtttcagtccgagccgcccccggaggtgttcaagaaatctaacctcaatctgcag
atttcatccacggccaaagtgcccacgaactgtatggaggtgaatggaagcagcagtcta
tcccagtcatattgttacaaagtgtgcctgactcccgaatctgccaaaagtgactttatg
tttctgaagccgtgcagccccggcagcacaccgaggaacaacgaggcgaagagcggagaa
aactcgtggaacgcgcaaagcaggagcgcatccgtgaacaacggagcaactactcccaat
gagctgaagcagccaaacacagactggactctcacaaagaatcagaactcctccattaaa
agttataactctataaacatggatggcaccctcatgcgtaaggccatgcacgcagaccca
gaaaactatgtcacgtccatggcacctggacagtactggacctggggtactcacatgaga
ggcatgaaagattacaagatgtctccttcaaccagtggggtcccctctcgcccctggact
cctcggtgcacacctcctccacaacaacagcagccgtcaatcccctcccaccctcaccct
caccctccacctgactaccaccacaatgtgtacatccctgggacaccatcaggcttttgc
accctgaggcccgcagtacagcgaagtgagctggacgtccacaattccttctccaccttt
ggcaagaagcgacgtcttcaaatgtccccccagggagaggctgcgattataaataatgac
ctgtacaatgactga
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