KEGG   Siniperca chuatsi (mandarin fish): 122880069
Entry
122880069         CDS       T08948                                 
Symbol
smu1a
Name
(RefSeq) WD40 repeat-containing protein SMU1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
schu  Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:schu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:schu03041]
    122880069 (smu1a)
Spliceosome [BR:schu03041]
 Complex B
  Other components
   Complex B specific factors
    122880069 (smu1a)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd WDR55 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta ANAPC4_WD40 LisH_TPL Beta-prop_EML Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_ACSF4 Beta-prop_RIG_2nd Ge1_WD40 WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_Nup120_160 Beta-prop_VPS8 WD40_MABP1-WDR62_1st Beta-prop_Aladin Beta-prop_Vps41 Beta-prop_NWD2_C Beta-prop_WDR41 Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_NUP159_NUP214 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_WDR19_1st Beta-prop_SCAP Beta-prop_BBS7 WD40_RFWD3 Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_IP5PC_F LisH LisH_PAC1 WD_LRWD1 VPS8_N PROPPIN LisH_WDR26 DUF7165 zf_topless Beta-prop_IFT122_2nd
Other DBs
NCBI-GeneID: 122880069
NCBI-ProteinID: XP_044060754
LinkDB
Position
LG8:complement(4231810..4239373)
AA seq 513 aa
MSLEVESADVIRLIMQYLKENNLHRTLATLQEETTVSLNTVDSIESFVADINSGHWDTVL
QAIQSLKLPDKTLIDLYEQVVLELIELRELGAARSLLRQTDPMIMLKQTQPERYIHLENL
LARSYFDPREAYPDGSSKEKRRAAIAQALAGEVSVVPPSRLMALLGQSLKWQQHQGLLPP
GMTIDLFRGKAAVKDVEEERFPTQLCRHIKFGQKSHVECSRFSPDGQYLVTGSVDGFIEV
WNFTTGKIRKDLKYQAQDNFMMMDDAVLCMGFSRDTEMLATGAQDGKIKVWKIQSGQCLR
RFERAHSKGVTCVSFCKDSSQLLSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEATFTPD
GHHIISASSDGTVKVWNMKTTECSNTFKPLGTSAGTDITVNNVILLPKNPEHFVVCNRSN
TVVIMNMQGQIVRSFSSGKREGGDFVCCTLSPRGEWIYCVGEDFVLYCFSTVTGKLERTL
TVHEKDVIGIAHHPHQNLIGTYSEDGLLKLWKP
NT seq 1542 nt   +upstreamnt  +downstreamnt
atgtctttggaggtggaatccgcagacgtgatccgtctgattatgcagtacttaaaggaa
aataatctgcaccggactctggccaccctgcaggaggagaccacagtgtctctgaacact
gtggacagtatagagagctttgtggcagacataaacagcggccactgggatactgtcctg
caagccatccagtccctcaagttgccagataagaccctgatagacctttatgaacaggtg
gtgttagagctgatcgagttgagagagttgggtgcagcccgttcactcctcaggcagacc
gaccccatgatcatgctgaaacagacgcagccagagagatacatccacctggagaacctg
ctggctcgctcttacttcgatcccagagaggcgtacccagatggcagcagtaaggagaag
cgtcgggcggccattgcccaggccctggcaggggaggtcagtgtggtgccaccctctcgt
ctcatggctctgctcggacagtctctgaagtggcagcagcatcagggcctgctgcctcct
ggtatgactatcgacttgttcaggggtaaagctgctgttaaagatgtggaggaggagcgc
ttccccacccagctctgcagacacatcaagtttggacagaaatctcatgtggagtgttcc
cgattctctcctgatggtcagtacctggtcactggatctgtggacggctttatcgaggtc
tggaacttcaccaccggaaaaatcagaaaggatctgaagtaccaggctcaggataacttc
atgatgatggacgatgcagtgttgtgtatgggcttcagtcgagacacagagatgttggcc
accggagcccaggatggaaagatcaaggtgtggaagatccagagtggtcagtgtctgagg
aggtttgaacgcgcccacagtaaaggagtaacatgcgtcagtttctgtaaagacagcagc
cagctcctcagtgcctccttcgaccagacaatcagaatccatgggctgaagtcaggtaaa
actcttaaggagttccgcggccactcctcatttgtgaacgaggccaccttcactccagac
ggccaccacatcatcagcgcttcctcggacggtacagtcaaggtgtggaacatgaagacc
acggagtgctccaacaccttcaagcctctgggcacgtcagctggcaccgacatcacagtc
aacaacgtcatcctgctgcccaagaacccggagcactttgtagtgtgtaaccgctccaac
acggtggtcatcatgaacatgcagggacagatcgtgaggagtttcagctccggtaagagg
gaaggtggtgacttcgtgtgctgcactctgtcgccccgcggcgagtggatctactgcgtg
ggtgaagactttgtgctctactgcttcagcaccgtcaccggcaagctggagagaacgctg
acggtccacgagaaggatgtgatcggcatcgcccaccacccccaccagaacctcatcggc
acctacagtgaggatggtctgctgaagctctggaagccttga

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