Siniperca chuatsi (mandarin fish): 122880313
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Entry
122880313 CDS
T08948
Symbol
pcdh12
Name
(RefSeq) protocadherin-12 isoform X1
KO
K16499
protocadherin delta 2
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
schu04515
]
122880313 (pcdh12)
Cell adhesion molecules [BR:
schu04515
]
Cadherins
Protocadherins
122880313 (pcdh12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_3
Sde0182_C
DUF5527
TMEM154
Motif
Other DBs
NCBI-GeneID:
122880313
NCBI-ProteinID:
XP_044061255
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All DBs
Position
LG8:complement(2748850..2769344)
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AA seq
1183 aa
AA seq
DB search
MLLALLLVLSLCSDAHCLDAHSSEPSSITIQYRVWEEQPMGTRVGRLVDDLRQRDEGGPL
EDFQVVEHGKALPFSVSTRDGVVSTQGRLDREELCRGSDLCELAFSVLYRKSGAVNCLRV
RVEVMDQNDHSPSFPSTLQEVEISETAGLRMRIPLDRAVDPDAGPNGLQTYSLSVNQHFA
LDVTVAPGGTKQAELVVIKELDREVQTSFDLTLMAWDKGNPPRSGSTLVHVNIQDSNDNS
PTFEDSTPTLELPEDTARGTTIINLKATDPDEGANGEVEYSLSKHTRPEVQRLFYVDPQT
GAISLTAPLDYEAQDSYEVIIQARDRGPNAIPTHCKLHVKLTDVNDNAPRIHMTWTPPNS
PVATVLEGALEDTFLALVMVSDADSGENGKVRAHIQPGSGPFCLKRIHGDNYMIVTNGSL
DREKVMQYNITLLAQDYGDPPLSCVKHLPVYVLDENDNAPVFSTSIYKASFKENNMAGYH
ALKVEAHDVDLELSGRVSYFIPDSNEVETNTQSFSIHPTSGVISVQRPLDYEESHTYSFI
VQAVDQGHPPLTSTTTVQINIQDVNDNYPVIKEPKPRKGVASLSVPVNADKGEIVTELGN
DMEEGSTTLPINHSVREGLVGFLASTIKAEDPDSGLNGQLSYLITDGNPYGLFWLDHTTG
QLFVNTTNATELIGKTFKVNIAVSDMGSPSLATKATLEVTFINLKDHLKNSSPGNRGQLS
FTMMMAICLGATCLLLLLAVALVTTFCRPEKRDNRAYNCRQAESTYTRHPRRPQKNIRKS
DIQLIPVIRGRKEEPLEDDSEAQPLAPSPMMSDDQKTERQYTLTPSVMNTSFHSQGYPEG
DATQPVTYHCKTLRKPGNIELDGSFPLTPATSHRTLRKARNPSSSSSVSHSSTLKRQTHA
QGEEAEALSSASQATLRRPKTSEGRGGHNAEHQQMLRNLVRLSMAAFGDSIELSSASPEV
QQISQLLSLLRQGQLQPRPNFRGNKYSHRNGRYGGQDCSDWQSTKDSGHGESEAGDVDWE
PGRDSPIDPQLEEGLNNLLNNTDDVFSQVSDPAWMARLSLPLTADYHDNVFVPNGPPSPE
SELLPRDGLDSSSFSTFGKTPEKDGPLGGTLLSEVSTLFEMLMTQKADAHPGPRPDVLYR
LSAAYRRSLGLDGTATTAAGNAPRNCGNAEKRSGLAPPSGLYH
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggctctgcttctggttctgagtctttgctctgacgctcactgcttggacgct
cactcctctgagccgtcatcaataactatccagtaccgggtatgggaggaacagccgatg
ggaacccgggtcggccgtctggtggacgacctccggcagagggacgaaggtggtcctctg
gaggatttccaggtggtggagcacggaaaagcccttcccttctctgtcagcactcgagac
ggtgtcgtctccacccagggccgattggacagggaggagctgtgccgggggtcagacttg
tgcgaactggccttcagcgtcctctacaggaaaagcggtgctgtgaactgcctgcgggtt
cgtgtggaggtgatggaccagaatgaccacagtcccagcttccccagcacgctgcaggaa
gtggagatctcagagacggctggcctcaggatgcgaatccctttggaccgggcagtggat
cctgatgcagggcctaatggcctccagacctactcgctgtccgtcaaccagcactttgct
ctggatgtgacagtcgctccaggtgggacaaaacaggcagagttggtggtgatcaaagaa
ttggacagggaagttcagacctcatttgacctcaccctgatggcatgggataaagggaac
ccccccaggtctgggagcacattggtccatgttaatattcaagactcaaatgataacagc
cccacgtttgaggacagcactcccactttggagctacctgaggatacagcccgtgggaca
accatcatcaacctcaaggccactgacccagacgagggtgccaatggggaagtggagtat
tcactcagtaagcacacacgtccagaggtacagaggctcttctatgtggatcctcaaacc
ggagctataagtctcacagcacctctggactacgaggcccaggactcttatgaagtaatc
atacaggcccgtgatcgcgggcccaatgcgatccccacgcactgcaaattgcatgtcaag
cttacagatgtaaacgataatgcaccaaggatacacatgacctggactccacccaactca
cctgtggcaactgtgctggaaggagcactagaggacaccttccttgctctggtgatggtc
tctgatgcagattcaggagaaaatggcaaagtgagagcacacattcagccaggatctggc
cctttctgccttaaacgtatccatggcgacaattacatgattgttaccaatggcagtctg
gatcgagagaaggtaatgcagtataatatcacgctcctcgcccaggactatggagatccc
cctctgtcttgtgttaaacatctgcctgtctatgttctggatgagaacgacaatgccccg
gtgttctccacctccatctataaggcttccttcaaggagaataacatggcaggttaccac
gctctcaaagttgaagcccacgatgttgacctggagctcagtggaagagtctcctacttc
atacccgactccaatgaagtggaaacgaacacacagtctttctccatccacccgaccagt
ggtgtcataagcgtccagcgtcctctagactacgaggaatctcacacctattctttcatt
gtgcaggccgttgaccagggtcatccgcctctcaccagcacgaccaccgtgcaaatcaac
atccaggatgtgaacgacaactacccagtaatcaaggagccaaaacccagaaagggtgtg
gcttctctaagtgtacctgtcaatgcagacaagggggagattgtgaccgagctagggaat
gacatggaagagggatccaccactttgccgatcaatcactcagtcagagagggacttgtt
ggattcctcgcatccaccataaaggcagaagacccagactcggggctgaacggacaactc
agctacctcatcactgacggaaacccctatggactgttctggttggatcatactacaggc
caactgtttgttaacaccaccaacgctactgagctaattgggaaaacctttaaggtgaac
attgctgtgtctgacatgggcagtcccagtctggccaccaaggcgactctggaggtgact
ttcatcaatctcaaggaccatctgaagaactcgtcacctggtaaccgcggacagctcagc
ttcaccatgatgatggcgatctgcctgggtgccacctgcctgctgcttctgttggccgtt
gctttggtgacaacattctgccgcccagagaaacgggacaaccgggcttacaactgcaga
caggctgagtcgacctacacccgtcacccgcggcgcccacagaagaacatcaggaagtct
gatatccagctaattcctgtcataagagggcgaaaggaggagcctcttgaggatgatagt
gaagcccagccactggctccatctccaatgatgtcagacgatcaaaaaactgagagacag
tataccttaacgccatcagtcatgaacacaagcttccattcccaaggctacccagaaggg
gatgccactcaacctgtcacctaccactgcaaaacgcttcggaaacctggaaacatcgaa
cttgatggcagttttcctctgacgcccgccacatcacatcggactcttcggaaagccagg
aacccttcatcatcctcttcagtctcacattcgagcaccttgaagcgccagactcacgct
caaggggaagaagcagaagcgttgagttcagcatcccaggcgactctcaggagaccgaag
acctcagagggacgaggggggcacaatgcagaacatcagcagatgcttcgaaacctggtt
cgactgtccatggctgcatttggagactccattgagctttcctctgcttccccagaagtg
cagcagatctcccagctcctctctctcctccggcagggtcagctgcagccaaggcccaac
ttcagggggaacaaatactctcatcgcaacggcagatatggaggccaggactgttctgat
tggcagagcaccaaagatagcggacacggtgaaagcgaggctggagatgtggactgggaa
ccaggaagagactcacctattgacccacagctggaggaggggcttaacaacctgctcaac
aacactgatgacgtcttctcgcaggtcagcgatccagcctggatggccagactctctctc
ccactcaccgccgattaccacgacaatgtttttgtccccaatgggcccccgtcccctgaa
agtgagctccttccccgggacggcctggactcctcgtccttctccaccttcggtaaaact
ccagagaaggacggcccactgggcgggaccctcctctctgaggtcagcacgctgtttgag
atgctgatgacgcagaaggccgacgcccaccccggcccgcggcccgatgtcctgtaccga
ctctctgcagcgtaccggcgctcgctgggcttggacggcacagccacgactgctgcaggc
aacgcaccgaggaactgtgggaacgctgagaagaggtcgggcctggctccaccctcagga
ctttatcactaa
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