Siniperca chuatsi (mandarin fish): 122880708
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Entry
122880708 CDS
T08948
Symbol
nfkb1
Name
(RefSeq) nuclear factor NF-kappa-B p105 subunit isoform X1
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04010
MAPK signaling pathway
schu04210
Apoptosis
schu04218
Cellular senescence
schu04620
Toll-like receptor signaling pathway
schu04621
NOD-like receptor signaling pathway
schu04622
RIG-I-like receptor signaling pathway
schu04623
Cytosolic DNA-sensing pathway
schu04625
C-type lectin receptor signaling pathway
schu04920
Adipocytokine signaling pathway
schu05132
Salmonella infection
schu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122880708 (nfkb1)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
122880708 (nfkb1)
04218 Cellular senescence
122880708 (nfkb1)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
122880708 (nfkb1)
04621 NOD-like receptor signaling pathway
122880708 (nfkb1)
04622 RIG-I-like receptor signaling pathway
122880708 (nfkb1)
04623 Cytosolic DNA-sensing pathway
122880708 (nfkb1)
04625 C-type lectin receptor signaling pathway
122880708 (nfkb1)
09152 Endocrine system
04920 Adipocytokine signaling pathway
122880708 (nfkb1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122880708 (nfkb1)
09171 Infectious disease: bacterial
05132 Salmonella infection
122880708 (nfkb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122880708 (nfkb1)
Transcription factors [BR:
schu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
122880708 (nfkb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_4
Ank_5
Ank_3
Death
Motif
Other DBs
NCBI-GeneID:
122880708
NCBI-ProteinID:
XP_044062022
LinkDB
All DBs
Position
LG8:complement(1010698..1045803)
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AA seq
929 aa
AA seq
DB search
MAGEDHYHQIFDNIMLEPSWDFPHFPAMSQTTSLQTVDGPFLQIVEQPKQRGFRFRYGCE
GPSHGGLPGASSEKNRKTYPTVKISNYQGPSRVVVQLVTALTPLPQLHAHSLVGKQCDKG
ICIADLQPKDSNISFPNLGILHVTKKNVAKTLEERMIEAYRMGYNCGVSIHPEIDAVQGE
VRVPRDLTEHQRSVISSVAALQAKEMDLSVVRLMFTAFLPDSDGGFSRRLEPVVSEPIYD
SKAPNASNLKIVRMDRTAGCVTGGEEVYLLCDKVQKDDIQVRFYEEDDSGLTWEALGDFS
PTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKEEVQR
KRQKTLPNFQDFSGHGGGGGGGGGGLYRGGGGGGGGPATGGGPGSAGGGGAYFQGFTTYN
YGGGGFSTGYSAGLGGGGIKHASQGDAADDSDPDDDSGSGVVLRASAQPGGLEVGERTEE
GGVSVEPEPHGDERLVISRQLEALFQYSVTGDSAYLLALQRPLIDAQDEDGDTGLHLAVL
HSQQEALKSLTQVASALPGQEVLNMRNHLYQTPLHLAVITQQREAVEALLLAGADPTLTD
RHGNTVLHLASQLEGGGMVQFLLQHRELRELLYHTNTAGLCAIHLAVLANQLSSLRELLE
GGANVEAQERSCGRTALHLATEADNVSLAGCLLLEGNANVDCCTFNGSTPLHIAAGRGSI
KLTALLMAAGADPHKENFEPLFFKEEECCDEEREDEDEDEGYIPGTTPLNMAATTQVLEL
LNGKQYEPTSPPRAFIPPQGDLASLDTEVKQEVCRALESEGCWENLAHSLGLGILKVAFR
LSPSPAKTLLDSYEVSGGTVRDLLAGLRSVGECRALSVLEEALRHLDDMDAQTANETRGE
SPCAQVQDLKADVRIDSGVCDSGVELSTA
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atggctggagaagaccactaccaccagatttttgacaacataatgttggagccatcgtgg
gacttcccgcattttcctgcgatgtctcagacgacatccctgcaaacagtggacgggccc
ttcctgcagatcgtggagcagcccaaacagcgtggcttcaggttcaggtacggctgcgaa
ggtccgtctcacggcggtctgcccggagcctccagtgagaagaacaggaagacctacccg
accgtcaagatcagtaactaccagggtccgtcccgggtggtggtgcagctggtgacggcg
ctgacccccctccctcagcttcacgctcacagtctggtgggaaaacagtgcgacaaaggg
atctgcatcgccgacctgcagcccaaagactccaacatcagttttccgaacctcggcatc
ctccacgtgacgaagaagaacgtggcgaagactctggaggagaggatgatcgaggcctac
aggatgggatacaactgcggagtctccatccaccccgagatcgacgccgtgcagggggaa
gtccgggtcccccgagacctcaccgagcaccagcgcagcgtgatcagcagcgtggctgct
cttcaggctaaagaaatggacctcagcgtggtccggctcatgttcacggcgttcctcccc
gacagcgacggaggtttctccagacgactcgagcccgtcgtctccgagccgatctacgac
agcaaggctccgaacgcctccaacctgaagattgtgaggatggaccgaactgctggctgc
gtgaccggaggagaggaggtctacctgctctgtgacaaagtccagaaagatgacatccag
gttcggttctacgaagaagacgactcggggttgacctgggaggctctgggagatttctcc
ccgacagatgttcacagacagttcgccatcgtgttcaagactccgaagtaccgagaccag
aacctgcagaagccgacgtctgtgttcgtccagctgaagaggaagtccgacaacgagacg
agcgagcctaagcccttcacctaccaccctcagatcatagacaaggaggaggtgcagagg
aagagacagaagacgttgccaaactttcaggacttcagcggtcatggaggaggaggagga
ggaggtggtggtggtctgtaccgaggaggaggaggaggaggaggaggtcctgctacagga
ggaggacctggctctgcaggaggaggaggagcttacttccagggcttcactacctacaat
tatggaggaggaggcttctccacaggatactcggctggtctgggaggaggaggcatcaaa
cacgcctcccagggcgacgcagcagacgacagcgatccagacgatgactcggggtcaggg
gtcgtgctgagagcttcagcccagccaggaggcctggaggtgggggagaggacggaggag
ggaggggtcagtgtggagccagaaccacacggagatgagcggttggttatcagcagacag
ctggaggcgctctttcagtactcagttacaggagattcagcgtacctgctggctctacag
cgccccctgatcgacgcacaggacgaggacggagacaccgggctccatctggcggttctc
cacagccagcaggaggcgctgaagagtctgactcaggttgcctctgctctgcctggacag
gaagtgctcaacatgaggaaccacctgtaccagactcctttgcacctggctgtgatcacc
cagcagagggaggcggtggaagcgctgctattggccggcgccgacccaactctgacagat
cgtcatggcaacacggtgctccacctggcgtcccagctggaaggaggagggatggtccag
tttctactacagcacagagagctgagagagctgctgtaccacaccaacacagcaggtctg
tgtgcgatccacctggcggttctggccaatcagctgtcttctctcagggagctgctggag
ggcggggctaacgtggaggctcaggagcgcagctgtggacggaccgcccttcacctcgcc
accgaggctgacaacgtgtcgctggccggctgcctgctgctggagggaaacgccaacgtg
gactgctgcaccttcaacggctccacccccctccacatcgctgcagggcggggctccatc
aagctaacagctctcctgatggctgcaggcgcagaccctcataaggagaacttcgagccg
ctgttcttcaaggaggaggagtgctgtgatgaagagagggaggatgaggatgaagatgaa
ggctacatcccaggaaccactccgctcaacatggccgccaccactcaggtgttggagctt
ctgaacggtaaacagtacgaaccaacatctccaccgagagctttcatccctcctcaaggc
gacctggcgagcctggacacggaggtgaagcaggaagtgtgtcgcgctctggagagtgaa
ggatgctgggagaatctggctcacagtctgggtctcgggatcctcaaagtggccttcaga
ctgagcccctcccccgccaaaacactgctggacagctacgaggtttcaggcgggacagtc
cgggatctgttggctggcctgaggtcagtgggagagtgcagagcgctgagcgtcctggag
gaggcgctgcgtcacctcgacgacatggacgcgcagacggccaacgagacgcgcggcgag
tctccgtgcgctcaggttcaggatctgaaggcggacgttcggatcgacagcggggtgtgc
gacagcggggtggagctctccacggcgtag
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