Siniperca chuatsi (mandarin fish): 122880717
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Entry
122880717 CDS
T08948
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122880717 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122880717 (clp1)
Enzymes [BR:
schu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
122880717 (clp1)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122880717 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
MMR_HSR1
TniB
AAA_16
AAA_22
AAA_18
CbiA
Motif
Other DBs
NCBI-GeneID:
122880717
NCBI-ProteinID:
XP_044062045
LinkDB
All DBs
Position
LG8:complement(15092411..15096020)
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AA seq
441 aa
AA seq
DB search
MATEGVEKTSEDAPTPGKVSTRFDLEKETELRFEVEAGEAAEQVELELLTGMAEVFGSEL
NRNKKYTFGPGSKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRKQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSRLAEVFSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFEVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGVSFYPFSFEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTYVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDMK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagagggtgtggaaaagacgagtgaagatgctccaacacctgggaaggtcagc
accaggtttgacctggagaaggagactgaacttcggtttgaggtggaggcaggggaggca
gcagagcaagttgagctggagctcctcacaggaatggctgaggtgtttggctcagagttg
aaccgcaacaagaagtacacatttggaccaggctccaagatcgcagttttcacctggcaa
ggctgcagtgtgaatctttatgggaaaccagaggtggcttatgtgtccaaggatactccc
atgctgctctacttgaacacacacgctgccctggaacagatgagaaaacaagcagagcgc
gacaatgagagggggccgagggtgatggtagtgggacctacagatgtggggaagtcaaca
gtgtgccggctgctattaagctatgctgtaagggtgggccggaggccaacactggtggaa
ctggatgtcggacagagtggggtgtctgtacctgggacagtgtcggcactgtgcattgag
cgtccagcagacgtggaggagggtttctcagtccaggctcctttggtctaccactttggc
tctactaccccagggaccaacatcaaactttacaacaagctgacgtcacgcctggctgag
gtgttttcccagcgctgtgaagtgaacaggaaggcaagtgtgggaggctgtatcatcaac
acctgcggctgggtgaagggctctggataccaggctctggtccactgtgcctctgccttt
gaggtggatgtggtgctggtgctggatcatgagaggctctacaatgaactcaaacgagac
ctccctcattttgtgcgggttgtgctcctacccaagtccgggggggtggtggagcgctcc
aaggagtgccggcgggatactcgggatgagaagatccgtgagtatttctacggcttccgt
ggagtgtccttctaccctttttcttttgaagtgcgtttctcagatgtccgcatctacaag
attggggcaccatctatcccagactcgtgcttgccactgggaatgtctcaggatgacaca
cagctaaagctggttcctgtgacaccaggaagagacctcacgtatcatgtgctgagcgtg
agcagtgctgaggacggagaggaaggtgccagaaagggtatagtggagagccctgtgtgt
ggctttattgtggtgacttatgtggatacgcaaacacaggtgatgaaggtgctgtcccca
gcgcccagaccactgcccaggcacactctgcttatcatggacatccgcttcatggacatg
aaatga
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