Siniperca chuatsi (mandarin fish): 122880774
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Entry
122880774 CDS
T08948
Symbol
pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122880774 (pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
schu01009
]
122880774 (pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
schu04515
]
122880774 (pcdh20)
Protein phosphatases and associated proteins [BR:
schu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122880774 (pcdh20)
Cell adhesion molecules [BR:
schu04515
]
Cadherins
Protocadherins
122880774 (pcdh20)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
122880774
NCBI-ProteinID:
XP_044062147
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All DBs
Position
LG8:complement(18951775..18955340)
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AA seq
859 aa
AA seq
DB search
MGHGTPDNMNWAGLLQNLLVVVHLRQIICGSVRFSIPEEQQPGILAGSLSKHFPPPYQLL
TQEYLWMDKNTGNFYTTEQKMDREALCPEETKAEECIILHNAVVGPSGDLIQFPVIIEDI
NDNAPHFENSEIHLRVSEDVTVGTSFLLDDLAQDRDAGRNGELRYRLEDSDGVFSLKVEE
DGPVIMLVVQTALDRETLDLYQMVLVATDCGSDPLSATVTLIVTVTDVNDNCPSFSSDSP
RSVTVLGDSQKNMLVAQVRATDPDSGPNAAIVYSLSPKVSERAKKLFSLDSLTGYIRLTQ
DLRSDNSEQLLLKVLASGHHCPPADTQITVSVLPKPNQELTVKIGFIAEHQNQTLVLPEN
QPPTVLAVLELEGDSSFKGSSLAIESEVPFTLSPQNGKYLLSTSKPLDYEMKNEHHISVV
VNGRSAEGSVIAPSRHVIRVMVADVNDNAPHFLQSHYQLEVEENNQPGMSLLQVSASDAD
SGHNGRVTYRLDTHTSTIFNIDPVTGQLSVSASLDREQQGVHKLTVFARDSGSPPLESVA
TVSIRVLDQNDNAPVFLTPHLIFFIPENVPPFAQVGRVGVTDPDEGENGNTELHVVNSSG
PFVVDNTQGTLRTTTNLDRETEDRYELYLLASDHGGPVALTSTARVTIFVGDINDNQPKV
ILPSSNSSCQTVSPATIAGTVVTKIYAIDMDSGMNSEITYTVVAPEPAQNSSPFRVDSRS
GNITVAQRLLRKDLGMHHLFIAVRDGGKPTPLYTTVWVNLLVNESMGSCHLDMAPTWMGT
PDLVQTPSKSPICEVEDTRSGQLMLLVGLGMMLASTCLLVTTAVLYLKQKRRSLQQNKRG
HTEENEIPLRLKDKYYSDD
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgggccatgggactcctgataatatgaattgggctggactactgcagaatctgttggtt
gtggtccatctccggcagatcatatgtggttctgtccggttttctatcccagaggaacag
cagcctggtattctggccgggtcacttagtaaacactttccacctccgtaccagctcctg
acccaggagtatctctggatggacaaaaacacggggaatttctacaccactgagcaaaag
atggatcgcgaggccctctgccccgaggagacaaaagctgaggaatgcattattctgcac
aatgctgtcgtggggccctcaggagaccttatacagtttcctgtgatcatagaggacatc
aatgacaatgcacctcattttgaaaacagtgaaatacacctgagggtgtccgaggacgtg
actgtggggactagtttcttattggatgacctggctcaggacagggatgccggacgtaac
ggcgagctgcgttaccgcctagaagattctgacggagttttcagtttaaaagtcgaagaa
gacgggcctgtcatcatgctggttgtgcaaacagctctggatagggagactctggacctg
tatcagatggtgctggtggccaccgactgtggctcagaccctttaagtgctacagtgact
ttaatagtcacagtgacagatgttaatgacaactgtccaagctttagctctgacagcccc
cgcagtgtcaccgtcctcggagactcccagaagaacatgctggttgctcaggtcagagcc
acagacccagattcaggcccgaatgctgccatagtttactccctcagtcccaaagtctct
gagcgggccaagaagctctttagcctcgacagcctcactgggtacatcaggctaacacag
gacctccggagtgacaactccgagcagctgctgttgaaagttttagctagcggccatcac
tgccccccagcagacactcagataaccgtatccgtgctccccaagccaaaccaagagctg
acggtcaagatcgggttcatagcggagcatcaaaaccagactctggtgttaccagaaaac
cagccccccaccgtcttagctgttttagagcttgagggtgacagcagctttaaaggctca
tctcttgctattgagagcgaagtgcctttcactttgagcccacagaatggcaaatatctg
ctttccacatcaaagcccctagactatgagatgaaaaatgaacatcatatttctgtggta
gtgaatgggagatcagctgaagggtctgtgatcgctccttccaggcatgtgatcagggtg
atggtggcagatgtcaatgataatgctccacatttcctccagtctcactatcagctggag
gtggaggaaaacaaccagccggggatgtcactgctgcaagtctcagcctcagacgcagac
agcggacacaacggcagagtgacctacaggctggacacacacacatctaccatatttaac
attgaccctgtgacaggtcaactgtctgtatcagcctctctggatagggaacagcagggt
gtacacaaactcactgtgtttgcacgagatagcggctctcctcccttggagtcagtggcc
acagtatccattcgagttctggaccagaatgacaatgcgcctgtttttctaacccctcac
ttgatcttttttatccctgagaatgtaccaccattcgcccaggtggggagagtaggggtg
acagacccagacgaaggggagaatgggaacacagagttacatgttgtaaacagcagtgga
ccttttgttgtggataacacccaggggacactacgcaccaccaccaacttggaccgcgag
acagaggaccgctatgaactctacctgctggccagcgatcatggtggcccggtcgctttg
acttccactgccagggtaactatctttgtgggggacatcaatgacaaccagccaaaagtg
atccttcccagcagcaactcctcatgccagactgtctctccagcaaccattgcaggcacc
gtagtaacaaagatctatgccatcgacatggactcagggatgaattcagagattacatac
actgttgtggcaccagagccagcgcaaaacagcagccccttccgggtggattcaaggtca
gggaacatcactgtagctcagcgacttctacggaaggacctgggaatgcatcacctgttc
attgcagtcagagatggggggaaaccaactccactttataccactgtctgggttaatctg
ttggtcaacgagagcatggggtcctgccacctggacatggcgcccacctggatggggaca
cctgacttggttcagaccccctcaaagtcccccatctgtgaggtggaggacactagatct
ggacagctgatgctgttagtaggcctgggtatgatgctggcatccacatgtttgcttgtg
acgacagctgttttatacttgaaacagaagagaagaagtctacaacagaacaagagggga
cacactgaggagaatgagattccactcaggctcaaagacaaatattactctgatgactaa
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