Siniperca chuatsi (mandarin fish): 122881113
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Entry
122881113 CDS
T08948
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04518
Integrin signaling
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122881113
04518 Integrin signaling
122881113
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122881113
09142 Cell motility
04820 Cytoskeleton in muscle cells
122881113
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122881113
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122881113
Exosome [BR:
schu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122881113
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122881113
Hyaluronan
Extracellular matrix or blood plasma proteins
122881113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_CoxE
VWA_3
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
122881113
NCBI-ProteinID:
XP_044062812
LinkDB
All DBs
Position
LG9:1408718..1486621
Genome browser
AA seq
2770 aa
AA seq
DB search
MEGRRGLLLSLIVAACFYGNASQKTVCTQEAVADIVFMVDGSWSIGTENFKQIRQFLYTL
VNSFDVGPDHVRIGLVQYSTQPRTEFLLNTYQNKKDILQYISNLPYMGGGTQTGEGLDFM
LNEHFVEAAGSRAGQNVPQIAVVITDGKSQDNVESQAQNLKRKGIVLYAIGIKDADEDQL
KEIANEPYSQHVHSVSDFAALQGISQSIVQTLCTTVEEVKRQLLQLSQECAKATMADIVF
LIDGSSSIGNDNFQEVRQFLRSVVVGLDIGPDKVRVGVAQYSDDPYQEFLLKDHMDKKSL
LAAVENLPYRKGGTETGKAINFLLTQYFTEEAGSRIGQRVPQIAVVITDGDSTDDVIMPA
QRLRQQGVIVFGIGVGKANLKELETIANRPPDRFLFTINNYQALQRLTEGLLQTVCVSVE
DQTQALAEKFADTFFLVDSGVTPAEFQQVRSILVRLANQMNIGASAYRLGLAQYGQDIKV
EFLLNAFQTKEETQNAVKRFRQRRPQPNEPRNLASALQYSRTHFFTREAGSRADQGYKQY
LVVLSGKDSDDPVYMESRLIRSSGITVVGMSLGASMAEMRLIATAPYIYESISNAVPILR
SIFETEEDQTTLTGDCKAAKVADIVFIVDESGSIGTPNFQLVRSFLHTIVSGLEISPARV
RVGIVMYNDKPTAQVYLNTFDDKNELLKFIKILPYHGGGTNTGAALNFTQQNVFIEERGS
RKDKGVQQVAVVITDGESQDNVSTAAANLRRAGVTVYAVGVKDANKAQLRAMVSYPPNKH
TYIVDSFAKLKSVEQTLQKSLCHNIIREAFSVSTRRTSIKEGCEQKDEADIFFLIDHSGS
IYPTDFDDMKKFIIEFLNTFRIGPQHVRMGVVKYADSPNLEFDLKEYSDAKTLENAVKGI
QQIGGGTETGRALAFMGEHFDRAITTRGHKVPEYLVVITDGKSSDEVKVPAEKLRAQGVI
IYAIGVKNADANELQQISGDPQRTFFVNNFDALKPIKDDIITDICSQDVCKDIPGDLLFL
IDSSGSISTDDYNKMKEFMKSVISKSIIGQNEVHVGVMQFSTIQQLEFPLNRYYSKEGMS
RAINDMQQIGGGTHTGEAITDVSQYFDATRGGRTNLRQRLIVITDGEAQDEVKGPAAALR
AKGVVVYAIGVVDANTTQLLEISGSPDRMYTERDFDALKDLDNQLALELCDPQRECKKTE
QADIIFLVDGSTSITQSKFRSMQKFMKSVVNQTTVGTDLTRFGVILYSTEPKSIFTLKKY
DSRQEVINAISALKSPYGDTYTGKALKYSLEFFNNEHGGRAALQVPQILMVITDGDATDR
NNLVVPSKALAEKGISVFSIGVEGANKTQLEIMAGHDTSKVFYVDSFDALETLYKNISHV
LCNSTKPVCEKQKADLVFLIDQSGSIDPKDYTTMKTFTTELVNSFKVSEDLVRVGLAQFS
STFQNEFYLNQYYTEQAVNKHILDMEQIGGGTNIGLALDSIRDYFEASRGSRRSAGISQN
LVLITDGESQDDVEDAADRLRALGIEVFAIGVGDVHDLELLQITGTPERLFTVQNFGSLE
NIKQKVVDTICKSKPLEDPSDCTIDIAMGFDISQRTGAPGEMLISGHTKLQTFLPEIVHY
VSSVQGLCCVGPTPVKTNLAFRVVSRDGRSLYDFNFEGYSEDVVRKVMTLNLAEPTYFNT
ALLKSFGEKFNTQSRAGVKVLVIFSDGFDEDVMKLEHESELLRQSGVSALLTVALEGVRD
PAQLQMVEFGRGFGYKLPLSIGMQSVGSTILKQIDMVSDRECCNVMCKCSGHEGIRGSRG
PPGSKGVIGQKGHPGFPGEEGVAGERGRPGPSGPQGVQGCSGLRGLKGHRGVRGDRGEDG
EDGLDGVNGEQGVTGKDGSRGERGHPGNPGIPGIRGEAGLKGQRGLRGDPGEPGADNTVP
GTKGEPGNPGLPGAPGQDGRPGESGVVGNPGPDGRRGPFGETGVPGQPGAPGLQGSPGAS
GSQGPGGVRGQPGPRGIPGLPGPQGGPGQAGDPGSAGRRGGNGQKGQQGDPGEKGVPGPQ
GPRGLPGQDGKDGYGPAGPKGAKGDPGFPGYPGLTGEDGLQGPKGYPGRKGNRGRGGNSG
RSGESGVSGEPGYPGHRGPRGPPGGKGMTECQLITYVRDNCACSIGQSECPAYPTELVFG
LDMSEDVTPAAFERQRSALLSLLEDITIAESNCPTGARVAVVGYSAYTKYLIRFHDYRRK
KQLIESVKNIALERTSNTRQLGAAMRFVGQNVFKRVRAGILMRKVAVFLSNGPSQDVNDI
LTAMMEYRGLNIVPAVISLRNAPSVDRAMGADDSGRSIFTVLGRDMAADLRKVKNCAICY
DPCKRSEQCAFIQEPVQPQEVDLDLVMVVDGSREMQADEYAGVQQLLGSVVEQLAVSPQP
RRAGNQARVAVVQQSGTQATKAEFGLQAYQNHDLMKRHLIQKMQQQSGSSALGQTLEFSL
KEVLLKASQPRRRRVLLTVVGTQTAYQDRAKLHYISQKAKCEGVAMFVVTVGERYNRTQV
EELASLPVQQHLIHVGRLKADEQGYAQRFIRVFLTAFNKGMNTYPPRSLKQTCEQLTDQE
GGQTFINGQGLAVVDEEEFAEEEEERFEEQTGGKTQTGQLDIIDTLTRGDGQRFVSSANV
NAHCQLMADSGIQCDDYVQAWFFDKDIGACSLFWYGGCGGNANRFNTENECFRTCGPHNP
NILPRLASFVSKDNCFLSQDQGSCQNYTMMWFFDTEQNECSRFWYGGCGGNDNRFETQEE
CENLCLTKSR
NT seq
8313 nt
NT seq
+upstream
nt +downstream
nt
atggaggggaggcggggtcttctcctgagcctcatcgtggcagcgtgtttctacggcaac
gcttctcagaagacagtctgcactcaagaggctgtagctgacatcgtcttcatggtcgac
gggtcgtggagcatcggcactgagaacttcaagcagatccgtcagtttctgtacacgctg
gtcaacagctttgacgtcgggcctgaccacgtccgcattgggctggtccagtacagcacc
caaccccgcaccgagttcctactcaacacctatcagaacaagaaggacatcctccagtac
atcagcaacttgccttacatggggggcggcacccagacgggggaaggcttggacttcatg
ctaaatgagcattttgtggaggcagctggaagccgggctggccagaatgtgccgcagatc
gctgtggtgatcaccgatggcaaatcacaagacaacgtggagtcccaagcccagaatctg
aagagaaagggaattgttttgtatgcaattggtatcaaagatgcagatgaagaccagctg
aaagagatagcgaatgagccgtacagtcagcatgtacacagcgtgtctgattttgcagca
ctgcagggaatttctcagagcatcgtccagacgctttgcacaactgtagaagaagtcaaa
cgacaactcctgcaactgtctcaagaatgtgccaaagccaccatggccgacatcgtcttc
ctgatcgacggctcctccagcatcggcaacgataactttcaggaggtccggcagtttctc
cgaagtgttgtcgtaggcctcgacatcggccctgacaaagttcgggtcggcgtggctcag
tacagtgatgatccttaccaggagttcctgctgaaggatcacatggacaagaaatccctg
ctggctgcggtggaaaaccttccctaccgaaaaggaggcacagaaacgggcaaggccatc
aacttcctcctgacgcagtacttcaccgaagaggcagggagccgaatcggccaacgggtg
cctcagatcgctgtggtcatcacagatggggactccacggatgatgtgataatgcctgcc
cagcgcctgaggcagcaaggagtcatagtatttggcatcggggtgggaaaagccaacctg
aaggagctcgaaaccatcgccaaccggcctccagatcgcttcctgtttaccatcaataac
taccaggctctgcagaggctgacagagggtctgttacaaactgtatgtgtctctgtggag
gatcagacgcaagccttggcagaaaagtttgctgacacgttcttcctggtggacagtggc
gtgactccagcagagttccagcaggtcaggagcatcctcgtccgactggctaatcaaatg
aacattggagcgtctgcctaccgtctgggcctggcccagtatggtcaagatatcaaggtg
gaatttcttcttaatgctttccaaaccaaagaggagacccagaacgctgttaagcgtttc
cgccagcgcagaccacaacccaacgagcctcgtaacttggctagcgcattgcagtacagc
agaactcactttttcactagagaggcaggaagccgggccgaccaaggctacaaacagtac
ctggttgttctaagtggaaaagactcagatgatcccgtgtatatggagtcacgtctgatc
agatcatcaggaataactgtggtggggatgagccttggtgcttcgatggcggaaatgcgt
ctcatagccactgcaccgtacatatatgagtctatcagcaatgctgtacctatactgagg
tctattttcgaaacagaggaagatcaaacgactcttactggagattgcaaagcagccaaa
gtggcagacatcgtgttcatcgttgatgagtctggaagcattggaaccccaaacttccag
ctggtgcgctctttcctgcacacaattgtgagcggcctagaaatcagtccagctagagtc
cgagtgggcatcgtgatgtataatgacaagcccacagcacaggtctacctcaacaccttt
gatgataagaacgaattgctgaagttcatcaaaatcctgccctatcatggagggggtacg
aacactggagctgccctaaatttcacccagcagaatgttttcatcgaggaaaggggaagc
aggaaagataagggtgtccagcaggtggcggtggtgatcacagatggtgaatcccaggac
aacgtgagcacagcagcagctaatctccgtcgtgctggtgtcacagtttacgcagtagga
gtcaaagatgccaacaaggcccagctgagagcgatggtgtcttatccccccaataagcat
acgtatattgtggacagttttgccaagctgaaatcggtggagcagaccctgcagaaaagt
ctgtgccataacataattcgggaagcgttctcagtcagtacaagaagaactagcatcaaa
gaaggctgcgaacaaaaagatgaagcagacatcttcttcctgattgatcactcaggaagc
atttaccccactgacttcgacgacatgaagaagttcatcattgagtttctaaataccttc
cgtattgggccacaacatgtccgcatgggggttgtaaaatacgcagattcgccaaattta
gaatttgatctaaaagagtactcagatgccaaaacattggagaacgcagtaaagggtatt
caacaaataggaggcgggacggagacaggaagagcgctggcattcatgggagaacacttt
gacagagcaataaccacccgtggtcacaaagttccagagtacctggtggtcatcactgat
ggaaaatcctctgatgaggtcaaggttcctgcagaaaaactgagggcacagggtgtcatc
atctatgccattggggtgaaaaatgcagatgcaaatgagctgcaacagatttccggcgac
cctcagaggactttctttgtcaataattttgatgctctgaagcccatcaaggatgacatc
atcacagacatctgttctcaagacgtttgcaaagacatacccggcgacctccttttcttg
attgacagctctgggagcatctctacagacgactacaacaaaatgaaagaattcatgaaa
tctgtcattagcaagtccatcatcgggcagaatgaagtgcatgttggtgtcatgcagttc
agcaccatccaacaactagagtttcccctcaaccgctactacagcaaggaaggaatgtcg
agagctatcaatgatatgcagcagattggtggaggtacacacacgggtgaagccatcaca
gatgtgtcgcagtatttcgatgcaactagaggagggcgtactaatctgaggcagaggctg
atagtgataaccgatggcgaggcccaagatgaggtcaaaggccccgctgcggctctgagg
gccaagggagtggtggtctatgccattggagtggtggacgccaacactacccagttgctg
gagatcagcggttcaccagacaggatgtatactgagagggactttgacgctctaaaggac
ttggacaatcagttggccttggagctctgtgatccacagagagagtgtaagaagacagaa
caagctgacattattttcctggtggatggctccacaagcataacccagagcaagtttaga
agcatgcagaagtttatgaagtcagtggtgaaccaaaccacagttggcacagatctgact
cgctttggggtcattctgtactccaccgagcccaaatctatttttactctgaaaaagtat
gactccagacaagaggttattaatgcaatatcagcactgaagtccccatatggagacacc
tacactggcaaggctttgaaatactctttagagttctttaacaatgaacatggtggtcga
gctgctctccaggtgccacagattctcatggtgatcacagatggagatgctactgaccgt
aacaatctggttgtgccatccaaggcactggcagaaaaagggatcagtgtcttcagtatc
ggagttgaaggagccaacaagacacagctggagatcatggctggtcacgacacatccaaa
gttttctatgtggacagttttgatgccctggaaactctgtacaagaatatttctcatgtc
ctctgcaattctaccaagccagtttgtgaaaaacagaaggctgacctggtcttcctaatc
gatcagtctggcagcatcgacccaaaggactacaccaccatgaaaacatttacgacagaa
ttagtaaacagcttcaaagtcagtgaagatttagtgcgtgtaggactagcccagttcagc
agcacttttcagaatgagttttaccttaaccagtattacaccgagcaagccgtgaacaag
cacatcttggatatggagcagatcggtggaggcaccaacatcggactggccctggattct
atcagggattactttgaggcgtcacggggaagccgtagatctgccgggatctcccagaat
ctggtgctgataacagatggtgaatcgcaggatgacgtggaggacgcggctgatcgtctc
agggctctggggatcgaggtgtttgccatcggcgttggagacgtccacgacctggagctc
ctgcagatcactggcactccggagaggctgtttactgtgcagaacttcggcagcttggaa
aacatcaagcaaaaggtggtcgacacaatctgcaaatccaaacccctcgaagatccctct
gactgcaccatagacatcgccatgggttttgatatttctcaaagaactggagctcctggt
gagatgctgatcagcggccacaccaagctccagaccttcctgccagagatcgtccattac
gtttcctcggtacaaggcctgtgctgcgtcggccccacgccggtcaagaccaacctcgcc
ttccgagtcgtgagtcgtgatggacgttccctgtacgacttcaactttgagggctacagt
gaagacgtggtgaggaaagtcatgaccttgaatttggcagagcccacttacttcaacacc
gccctgctgaaatccttcggggagaagttcaacacacagtccagagctggcgtgaaggtg
ctggtgatcttctcagacggattcgatgaagacgtgatgaagctggaacatgaatcagag
ctgctgcgacagtcaggggtcagcgctctgctgactgtggctctggagggagtgcgtgac
cccgcccagctgcagatggtggagtttggccgaggattcggctacaagcttcctctcagc
atcggcatgcagagcgtcggcagcaccatcctcaaacagattgacatggtgtcagatagg
gagtgctgcaacgtcatgtgcaaatgttcgggacatgaaggcatccgtggctctcggggc
cccccggggtcaaagggtgtgattggacagaagggtcaccccggattccccggagaggag
ggcgtcgctggagagcggggccgtcctggaccgagcggacctcagggtgtccagggttgt
tctggactcaggggactgaagggccaccgaggcgtccggggagacaggggggaagacgga
gaagacggactggacggagttaacggagaacagggagtgacgggaaaagacggaagtcga
ggagagagaggacacccaggaaacccaggtatcccaggtatcagaggggaggcggggctg
aaaggacagcgaggactgagaggagatccgggtgaaccaggtgctgataacaccgtccca
gggaccaaaggagagcccgggaaccccggtttaccgggtgcacctggacaggacgggcgg
ccaggtgagagtggagtcgttggaaacccgggtccagatggaagacgagggccattcggt
gagacgggtgtacctggacagccaggagctccaggactccaaggcagcccaggtgcttca
ggttcacagggtcccggaggggtcagaggtcagcctggaccgagaggaatccctggcctt
cctggacctcagggtggtccaggacaggccggagacccaggatcagccggacgccgtgga
ggtaacgggcagaagggccaacaaggagatccaggagagaaaggagtgccaggtccacag
ggccccagaggactgccgggtcaggatggcaaagacggttatggacctgcaggacctaaa
ggtgccaagggagatcctggtttccctggttaccccggtctaacgggggaggacggcctg
cagggacccaaaggatatccaggacggaaagggaaccgaggtcgaggggggaactcaggc
aggtcgggagaatcaggcgtgtctggagaaccaggatatccgggacacaggggtcccaga
ggtcctcctggaggcaaaggcatgactgagtgccagctgatcacctacgtcagagacaac
tgcgcatgttccatcggtcaatcagagtgcccggcgtaccccaccgagctggtcttcggt
ctggacatgtccgaggacgtgacccccgcagccttcgagaggcagcgctccgccctcctc
tccctgctggaggacatcaccatcgccgaaagcaactgtccgactggcgctcgcgtcgct
gtggtgggatacagcgcctacaccaagtacctgatccgcttccatgactaccgccgcaag
aaacagctgatcgaatctgtaaagaacatcgccctggagaggacgtccaacactcgccag
ctgggggccgccatgcgctttgtgggtcagaacgtcttcaaacgcgtccgagcaggaatc
ttgatgaggaaggtggcagtgttcctttctaatgggccttcacaggatgttaacgacatt
ctcaccgccatgatggagtaccgcggcctcaacatcgtcccggcggtcatctctctgagg
aacgctccgtctgttgatcgagcgatgggggctgacgactcgggaagatccatcttcaca
gtgctggggagggacatggctgctgacctgaggaaggtcaagaactgtgccatctgttac
gacccctgcaaacgttcagagcagtgcgccttcatccaggaaccagtgcagcctcaggag
gtcgacttggacctggtcatggtggtggacggctccagggagatgcaggctgatgagtac
gctggtgtccagcagctgttgggctctgtggtggaacagctggccgtgagcccgcagccc
cgcagggccggcaaccaggcccgggtggctgtagtccagcagagcggcacccaggctacc
aaggcagagtttggcctgcaggcctaccagaaccacgacctgatgaagaggcatctgatc
cagaaaatgcagcagcagagcggctcctctgcgctgggacagacgctggagttctccctg
aaggaggtgctcctgaaggccagccagccccggaggaggagggtgctgctgactgtggtg
ggcacccagacggcttaccaggaccgagccaagctgcactacatctcccagaaggccaag
tgcgagggggtggcgatgtttgtggtgacggtcggcgagcgctacaaccggacgcaggtg
gaggagctggccagtctgcctgtacagcagcacctgatccacgtcggcagactgaaggcc
gacgagcagggctacgcccagcgcttcatcagagtcttcctcaccgccttcaacaaggga
atgaacacgtaccctcctcggtctttaaaacagacatgtgagcagctgacagaccaggaa
ggaggacagacattcataaacggccaggggctggctgtggtggatgaggaggagtttgca
gaggaggaggaggagaggtttgaggagcagacgggaggaaagactcagaccggccagctg
gacatcatcgacacgctgaccagaggagacggccagagatttgtctcaagcgctaacgtc
aacgcccactgtcagctgatggctgatagtggtatccagtgtgacgactatgtccaagcg
tggttctttgacaaagacatcggtgcatgctcgctcttctggtatggcggttgcggcggt
aacgccaaccgctttaacactgaaaatgaatgtttccggacatgtggcccccataatcca
aacatcctgccgaggctggccagctttgtctccaaagacaactgtttcctcagccaggac
cagggcagctgccagaactacaccatgatgtggttcttcgacacggaacagaacgaatgt
tctcgcttctggtacggcggctgcggcggcaacgacaaccgcttcgagacgcaagaggag
tgtgagaacctctgtctgacgaagagccgctga
DBGET
integrated database retrieval system
