Siniperca chuatsi (mandarin fish): 122881114
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Entry
122881114 CDS
T08948
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122881114
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122881114
09142 Cell motility
04820 Cytoskeleton in muscle cells
122881114
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122881114
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122881114
Exosome [BR:
schu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
122881114
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122881114
Hyaluronan
Extracellular matrix or blood plasma proteins
122881114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
122881114
NCBI-ProteinID:
XP_044062815
LinkDB
All DBs
Position
LG9:1340432..1399809
Genome browser
AA seq
2510 aa
AA seq
DB search
MAKKTPRSKTNRPRKGRQKLTSRPSMKGRTSLLFFLIIAAYSYGIAAQAIECENATVADI
VFLIDGSTSIGTDSFQEVRYFLRNIIKALDIGPNKVRVGVAQYSDDPYQEFLLKDHMDKK
SLLAAVENLPYRKGGTETGKAINFLLTQYFTKDAGSRVSQRVPQIAVVITDGESTDDVVA
PAQRLRQQGVIVFGIGVGQINQKQLVSIANWPPDRFLFTINSYEALQRLTEGLLQTVCVS
VGQMKEALVDRFADVFFLVDNGMSQGLFSVFRSDLVKVINQMNVGASTYRVGLAQYGQDT
NVEFFLNAYQTKQETLVGVKRFRLRPESNEPRNLGSALEYASTRFFSKETGGRAHLGSRQ
FLVVLSAKDSDDPVSKAARKIKSEGITIIGMSAGATMDVIDRFASPGYAFDSSRLTRIKD
VIMIEKPETITEDCKGANVADIVFIVDESGSIGTDNFQLVRSFLHSIVSGLDVSPSNVRV
GIVTYNERPTAQVYLDTFNDKAEILQFIKILAYNGGGTYTGAALKFTQEELFIKKKGSRK
GVQQVAIVITDGKSQDSVSEAAIALRRAGVTIYAVGIENANEAELIEMASYPPYQHVFIE
KSFTKLKPLKQSLQKTLCSSIIHQAVTISTTTENIKEACEQKDEADIFFLMDDSGSIGNE
DFYDMKKFIIEFLHVFRIGPHHVRMGLVKYSDAATLEFDLTTHSDVVKLEKAVKGIAHKG
GGTNTGKALLSMGPYFEDAKRTRGHNVPRYLIVITDGKSSDKVLAPAESLRAQDVVIYAV
GVKDSNVTELEQIAGDPERTFFVSNFDALKSINNDIITDICSPDICKDIPVDVFFLTDSS
DSIDPEDFQKMKEFMISTINKSIIGQNKVHFGVMQFSTIQRLEFPLNRYYSKVEMEKVIN
DMQQMSEGTHTGKAITEVSKYFDATRGGRPNLSQKLIVITDGRAKDEVKGPAAALRAKGV
VVYAIGVGKAESSQLLELSGSLDRIYVGRTFDALKALESELALKICDPTRECKKIEKADI
IFLVDGSTSIDSTEFKSMQTFMQSIVNQTTVGKDLTRFGVILYSTETKLDFTLNTYDTRQ
GVLKAITNLVPPGGDTYTGKALAYSLEFFNTKHGGRKQRKVPQILMVITDGDATDHHKLK
PTSDALRDNQITVFSIGVKEAIRDQLETMAGGDISKVFYVDNFEALETLYKNISSVLCNS
TKPACEKDKADLVFLLDHSSSITRDNYKIMINFTKEVVNSFNVSEKSVHVGLAQFSDNPK
HEFDLDKYSKKEDVIIHIDNMEYRGGNTFIGKALDHIKDYFNTLRGGRSLVPKNLVLITD
GDSHDDVEDAADRVRALGIEVLVIGVGDVHDLQLLQITGTPERLFTVQNFNSLINIKKKV
VDTICKTPTDPPGCSIDIAMGFDISRRTGAPGEMLISGHTKLQTFLPEIVHYVSSVQGLC
CVTEPVNTNIAFQVVDRDGRSLYDTNFEVYNEDVVKKVMTLQMSEPTYFNTALLKSFNKR
FEMSNAGVKVLVIFTDGFDEDVMKLKHESELLRQSGVSALLTVALEGVRDPAQLQKVEFG
RGFGYKLPLSIGMPSVGSTILKQIDMVSDRECCNVMCKCSGHEGIHGSPGKPGIKGESGQ
KGQPGFPGEEGVIGERGPPGPSGPQGLQGCPGARGQKGYRGLSGNRGENGEDGLDGVDGE
QGLTGPDGARGERGHPGNPGIPGIRGEAGLKGQRGLRGDPGESGADNTVPGAKGEPGNPG
LPGPPGKDGRPGEGGIDGNPGPDGRRGAVGGKGAPGPPGAPGLRGSPGAPGPQGTRGENG
DRGPKGMSGFPGPQGGPGLPGDPGLAGRRGANGQKGQPGDPGVKGAPGSQGPRGQPGQDG
RDGYGSPGPKGAKGDPGFPGYPGLLGEDGLKGTKGYPGRKGNRGRGGNSGRPGESGVPGD
PGHPGHSGPRGPPGGKSMAECELVTYIRDNCACSHGHSECPAYPTELVFGLDMSEDVTPA
AFERQRSALLSLLEDINIAESNCPTGARVAVVGYSAYTKYLIRFHDYRRKKQLIESVKNI
ALERTSNTRQLGAAMRFVGQNVFKRVRAGILMRKVAVFFSNGPSQDVNDIVTAMMEYRGL
NIVPAVISLRNAPSVDRALQVDDTGNSIFTVLGRLQDLAADLSKVKNCAICYDPCKRLEQ
CAFIQDVPKPQEVDLDLVMVVDGSREVQADEYAGVQQLLGSVVEQLAVSPQPRRAGNQAR
VAVVQQSGTQATKVEFGLQAYQNHDLMKRHLIQKMQQQSGSSALGQTLEFSLKEVLLKAS
QPRRRRALLTVVGTQTGYRDRAKLHYISQKAKCEGVAMFVVTVSERYNRTQVEELASLPV
QQHLIHVGRLKADEQGYAQRFIRVFLTAINKGMNTYPPPSLKKTCNQLTDQEEEQFLNGQ
GSALLEEDLIMDEVAEKFQEQTGVQTQTAQLDVINTLTRRDRQSSLLGANLNDTCFLSQD
VGSCQNYTIMWFFDNEKGKCSRFWYSGCGGNENRFKSLKDCENLCLTKNP
NT seq
7533 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagaagacgccgcgctccaaaacaaacaggccacgcaaaggaagacagaaactc
acgagccgtcccagcatgaagggaagaacgagtcttctattcttcctcatcatcgcagcg
tattcctatggcatcgctgctcaggcaatagagtgtgaaaatgccaccgtggctgacatc
gtcttcctaatcgatggctccaccagcattggcactgatagctttcaagaggtccggtat
tttctccgcaacatcatcaaggccctcgacatcggccccaacaaagttcgggtcggcgtg
gctcagtacagtgatgatccttaccaggagttcctgctgaaggatcacatggacaagaaa
tccctgctggctgcggtggaaaaccttccctaccgaaaaggaggcacagaaacgggcaag
gccatcaacttcctcctgacgcagtacttcaccaaagacgcagggagccgagtcagccaa
cgggtgcctcagatcgctgtggtcatcacagatggagagtccacggatgatgtggtagca
cccgcccagcgcctgaggcagcaaggagtcattgtgtttggcatcggggtgggacaaatc
aaccaaaagcagcttgtgtccatcgccaactggcctccagatcgcttcctgtttaccata
aatagctacgaggctctgcagaggctgacagagggtctgctgcaaactgtatgtgtctct
gtggggcaaatgaaagaagctttggtggacaggtttgcagatgttttcttcctggtggac
aatggcatgtctcaaggactgttctccgtgtttagatctgaccttgtcaaagtgatcaat
caaatgaatgttggagcgtccacctaccgtgtcggtttggcccagtacggtcaagatacc
aacgtcgaattctttctcaatgcttatcaaactaaacaggagaccctggttggtgtcaaa
cgtttccgcctgcgcccagaatccaacgagccacgtaacctgggcagtgctctggagtac
gctagcactcgctttttcagcaaagagacggggggccgtgcacacctaggctcccgacag
ttcctagtcgttttgagtgcaaaagactcagacgatcctgtgtctaaggcggctcgtaag
atcaaatcagaagggataactatcattgggatgagcgcaggtgcaacaatggatgtaata
gaccgttttgccagccctgggtatgcatttgattcttccagactaactcgtataaaagat
gtcatcatgattgagaaaccggagaccattactgaagattgcaaaggagccaatgtggca
gacatcgtgttcattgttgatgagtcgggaagcattggaaccgacaacttccagctggtg
cgctctttcctgcactcaattgtgagcggcctggatgtcagtccgtctaacgtccgagta
ggcattgttacatacaacgaaaggcccacagcacaggtctacctcgacacgttcaatgac
aaggccgaaatcctgcagttcatcaagatcctcgcttacaatggaggtggtacctacact
ggagctgccctaaagttcactcaggaagaactcttcattaagaaaaagggaagcaggaag
ggtgtccagcaggtggcaatagtgatcaccgacggtaaatcccaggattctgtgagcgaa
gcggcaatcgctcttcgtcgggctggtgtcaccatttacgctgtaggaatcgaaaatgcc
aacgaggccgaactgatagagatggcgtcttaccccccttatcagcacgtttttattgag
aaaagtttcaccaagcttaaacccctgaagcagagccttcagaaaaccctgtgcagtagc
atcattcaccaagctgtcacaatcagtacaaccacagaaaacatcaaagaagcatgtgaa
caaaaggatgaagcagacatcttcttcctgatggacgactcaggaagcattggtaacgaa
gacttctatgacatgaagaagttcatcattgagtttcttcatgtcttccgtattgggcca
caccatgtccgcatggggcttgttaaatactcagatgcggcaactttggaatttgacctg
acaacccactcagatgttgttaaactggagaaagctgtgaagggtattgcacacaaagga
ggtgggacaaacacaggaaaagcgctattatccatgggaccctactttgaagacgcaaag
agaactcgtggtcacaatgtcccacggtacctgatcgtcatcaccgatggaaaatcctcc
gataaggtcttggctcctgcagaaagtttgagggcacaggatgtcgtcatctatgccgtc
ggggtgaaagattcaaacgtgactgagctggaacagattgctggcgaccccgagaggact
ttctttgttagtaattttgatgccctgaagtccatcaacaatgacatcatcacagacatc
tgttctccagatatttgcaaagacataccggttgacgtctttttcttaactgatagctct
gacagcatcgatccagaagacttccagaaaatgaaagaattcatgatatctaccattaac
aagtccatcatcgggcagaataaggtgcattttggtgtcatgcagttcagcaccatccaa
agactagagtttcccctcaaccgctactacagcaaagtggaaatggaaaaagtcatcaat
gatatgcagcagatgagtgaaggcacgcacacaggaaaggccatcacagaggtgtcgaag
tatttcgatgcaaccagaggagggcgtcctaatctgagtcagaagctgatagtgataacc
gatggccgggccaaagacgaggtcaaaggccccgctgcagctctgagggccaagggagtg
gtggtctatgccattggagtggggaaagctgaatcttcccagctgttagagctcagtggt
tcattggacaggatatatgttgggaggacctttgatgcgctgaaggccctggagagcgaa
ttggccttgaagatctgcgatccaacgagagaatgtaagaagatagagaaagctgacatt
attttcctggtggacgggtccacaagcatagattcaacagagttcaaaagcatgcagaca
tttatgcagtcaatagtgaaccaaaccacagttggcaaggacctgactcgttttggggtc
attctctactccactgaaacaaagttggattttactctaaacacctatgacaccagacaa
ggcgttcttaaagcaataacaaatttggtgccaccaggaggagacacctacacaggcaag
gccttggcatactcattagagttctttaacactaaacatggcggccggaaacaacggaag
gtgcctcagattctcatggtgatcacagacggggatgccaccgaccatcacaaactaaag
ccgacatctgatgcactgcgagacaaccagatcaccgtcttcagtatcggagtgaaagaa
gcaatcagggaccagttggagaccatggctggtggcgacatatccaaagttttctatgtg
gacaattttgaggccttagaaactctgtacaagaatatttcttctgtcctctgcaattcc
actaagccagcttgcgagaaagataaggccgacctggtctttctactcgatcattctagc
agcatcaccagagacaattacaaaatcatgataaacttcacgaaagaagtagtgaacagc
tttaatgtcagtgaaaagtctgtgcatgttggacttgcacagttcagcgataatcctaaa
catgagtttgacctcgacaagtactccaagaaggaggatgtgatcatacacatcgacaat
atggaataccggggtggaaacacctttatcggaaaggctttggatcacattaaggattac
ttcaacacgttacggggcggccgtagtttggtccccaagaatctggtgttgataacagat
ggcgattctcatgatgacgtggaggacgcggctgatcgtgtcagggctctggggatcgag
gtgttggtcatcggtgttggagacgtccacgaccttcagctcctgcagatcactggcact
ccggagaggctgtttactgtgcagaacttcaacagcttgataaacatcaagaaaaaggtg
gtcgacaccatctgcaaaacccccacagatccccctggctgcagcatagacatcgccatg
ggttttgatatttctcgaagaactggagctcctggtgagatgctgatcagcggccacacc
aagctccagaccttcctgccagagatcgtccattacgtttcctcggtacaaggcctgtgc
tgcgtgacggaacctgtcaataccaacattgccttccaagtggtggatcgtgatggacgt
tccctgtacgacacaaactttgaagtctacaacgaagatgtggtgaagaaagtcatgacc
ctgcagatgtcggaacctacctactttaacactgccctgctgaaatccttcaacaagagg
tttgaaatgtccaacgctggtgtgaaggtgctggtgatcttcacagacggattcgatgaa
gacgtgatgaaactgaagcatgaatcagagctgctgcgacagtctggggtcagcgctctg
ctgactgtggctctggagggagtgcgtgaccccgcccagctgcagaaggtggagtttggt
cgaggattcggctacaagcttcctctcagcatcggcatgccgagcgtcggcagcaccatc
ctcaaacagattgacatggtgtcagatagggagtgctgcaacgtcatgtgcaaatgttcg
ggacatgaaggcatccatgggtctccaggcaaaccggggataaagggtgagtctggacag
aagggtcaaccaggcttcccgggagaggagggagtcattggtgagcgagggcctcctggg
ccaagtggacctcagggcctccagggctgtcctggagccagaggacagaagggctaccga
ggactttcgggcaacaggggtgaaaatggagaagacggactggacggagtcgacggagag
caggggctgacgggaccggatggcgctcgaggagagagaggacacccaggaaacccaggt
atcccaggtatcagaggggaggcggggctgaaaggacagcgaggactgagaggagatccg
ggtgaatcgggtgctgataacaccgtcccaggagccaagggagagcccgggaacccaggt
ttaccgggtccacctggaaaggacggacggccaggtgagggtggaatcgatggaaacccg
ggtccagatggaagaagaggcgcagtcggtgggaagggtgcacctggacccccgggagca
ccaggacttcggggcagcccaggtgctcctggtccacagggaaccagaggggaaaacggt
gatcgtggaccaaaaggaatgtctggctttcctggacctcagggtggaccaggactaccc
ggagatccaggattagccggacgccgtggcgctaacggacagaagggccaaccaggagat
ccgggtgttaagggtgctccgggatcacagggacccagaggacagccaggtcaggatggc
agagacggttatggaagtccaggacccaaaggtgccaagggagatccgggttttcctggt
taccctggtctgctgggcgaggacggtctgaagggaaccaaaggatatccaggacgcaaa
gggaaccgaggtcgaggggggaactcgggcaggcccggagagtcaggcgtgcctggagac
ccgggacatccaggacacagtggtcccagaggtcctcctggaggcaaaagcatggctgag
tgtgagctggtcacctacatcagagacaactgtgcatgttcccacggtcattcagagtgc
ccggcgtaccccaccgagctggtgttcggtctggacatgtccgaggacgtgacccccgca
gccttcgagaggcagcgctccgccctcctctccctgctggaggacatcaacatcgccgaa
agcaactgtccgactggcgctcgcgtcgctgtggtgggatacagcgcctacaccaagtac
ctgatccgcttccatgactaccgccgcaaaaaacagctgatcgaatctgtgaagaacatc
gccctggagaggacgtccaacactcgccagctgggggccgccatgcgctttgtgggtcag
aacgtcttcaaacgcgtccgagcaggaatcttgatgaggaaggtggcagtttttttctcc
aatgggccgtctcaggatgttaacgacatcgtcaccgccatgatggagtaccgcggcctc
aacatcgtcccggcggtcatctctctgaggaacgctccgtctgttgatcgagcattgcag
gttgatgacacaggaaactccatcttcacagtgctggggaggctgcaggacttggctgct
gacctgagcaaggtcaagaactgtgcaatctgttatgacccctgcaaacgtttagagcag
tgcgccttcatccaggacgtcccgaagcctcaggaggtcgacttggacctggtcatggtg
gtggacggctccagggaggtgcaggctgatgagtacgctggtgtccagcagctgttgggc
tctgtggtggaacagctggccgtgagcccgcagccccgccgggccggcaaccaggcccgg
gtggctgtagtccagcagagcggcacccaggctaccaaggtagagtttggcctgcaggcc
taccagaaccacgacctgatgaagaggcatctgatccagaaaatgcagcagcagagcggc
tcctctgcgctgggacagacgctggagttctccctgaaggaggtgctcctgaaggccagc
cagccccggaggaggagggcgctgctgactgtggtgggcacccagacgggttaccgggac
cgagccaagctgcactacatctcccagaaggccaagtgcgagggggtggcgatgtttgtg
gtgacggtcagcgagcgctacaaccggacgcaggtggaggagctggccagtctgcctgta
cagcagcacctgatccacgtcggcagactgaaggccgacgagcagggctacgcccagcgc
ttcatcagagtcttcctcaccgccatcaacaagggaatgaacacgtatcctcctccttca
ttaaaaaagacctgcaaccagctgacagaccaggaagaagaacagttcttaaatggtcag
gggtcggcactgctggaggaggatttgattatggatgaggtggcggagaagtttcaggag
cagacgggagtacagactcagactgctcagctggatgtcatcaacacattgaccagaagg
gaccgccagagttcgctcttaggagctaacctcaacgacacctgtttcctcagccaggat
gtcggcagctgccagaactacaccataatgtggttctttgacaacgaaaagggtaaatgc
tcccgcttctggtacagcggctgtggtggcaacgaaaatcgcttcaagtcactgaaggat
tgtgagaacctctgtctgacgaagaatccatga
DBGET
integrated database retrieval system
