Siniperca chuatsi (mandarin fish): 122881248
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Entry
122881248 CDS
T08948
Symbol
nod1
Name
(RefSeq) nucleotide-binding oligomerization domain-containing protein 1 isoform X1
KO
K08727
nucleotide-binding oligomerization domain-containing protein 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04621
NOD-like receptor signaling pathway
schu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
122881248 (nod1)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122881248 (nod1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
schu04054
]
122881248 (nod1)
Pattern recognition receptors [BR:
schu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
122881248 (nod1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
NLRC4_HD2
CARD
LRR_6
NOD2_WH
LRR_4
AAA_16
AAA_22
PIF1
RsgA_GTPase
ATPase_2
Roc
AAA_30
RNA_helicase
AAA_18
ABC_tran
Motif
Other DBs
NCBI-GeneID:
122881248
NCBI-ProteinID:
XP_044063117
LinkDB
All DBs
Position
LG9:27224669..27237804
Genome browser
AA seq
941 aa
AA seq
DB search
MGQKEEAKVSCLNILTYHRELLVSRLKSIQCILDNLLASGFVCEEDVEIVQRTVTKTDQV
RKILELVQCKGEEACEFFIYIIYKVYDAYIDLQPWLKEINYNPSNDVTVIQVVNTDPISR
YCEKLRHDMSRDTCFIMSYSQQEETRLEELYTDTLMELLNDRNESLGFLESLDQLLGDHA
VFNTQGEIIYVMGDAGVGKSILLQKLQNLWSKKELQTDTIFFFKFRCRMFSIFKDTEQIS
LRDLLFKYNCYPDQDPDNEVFDYILRFPEKVLFTFDGYDEIQEDLDLMNVPEVVSPEDKA
HPLQLLISLLCGKLLKGSQKVLTARTGIQIQSKVIRKKVALKGFSPAHLKTYIDLHFKEQ
EHRELVSVQLDASPHLCGLCSTPLFSWIVFKSFRHLHTMHDNFHLPEICITLTDIFLLLS
EVFLSRTASLAPSLLKKSTRCASETFKAGLRPLAAFAKLALKGMERGSFICSQEEITVCG
LTEEDLPLGFLRPVSEYDASGSPATFEFLHITLQSFLAACALVLDEQDAASSILKFFTEC
SRKREASCLPFDFCISGSSKPSEKNPFANNEHLQFTNLFLCGLLSKAHTGLMEHLVSPVL
LKKKRALLKSYLSTSVKSHLHGLPHYTGEEGVKVHVLPNFLWILRCIFETGSKDIAQMTA
KGITSGFIKLGYCNVFSGDCTALNFVLQHRQKLLGLDMDNNNISDYGVKQLRPSFCKMTV
VRLCVNQLSDSSIEVLAEELCKHKVVEVLGLYNNHITDVGAKLVAQIIEECPKLRMVKIG
KNKITSVGGRYLASAIQKSTSIFDVGMWGNSIGDEGAEAFAEALRHHPRLTNLSLSANGI
TSKGGKCLAEALKKNSVLRIFWLVQNEMTDDAAAHFAELVQANTGLTHLWLISNQFTVDG
IKHFAEALNHNTALKEICVKGNQLSEEEEKQFVTEKRLRFN
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgggtcaaaaagaagaagccaaggtgtcgtgccttaacatcctaacctaccacagagag
ctgctggtgtccaggttgaagagtattcaatgcatactggacaacctgttggcctctggc
ttcgtctgtgaagaagatgttgagatcgtacagcgaactgtcaccaagacagatcaggtg
cgcaaaatcttggagctagtccaatgcaaaggggaggaggcctgtgaattctttatttac
atcatatataaagtatatgatgcatacatagacctccagccatggttgaaagaaatcaac
tacaacccaagcaatgacgtaacggtgatacaagtggttaacacagatcccatcagcaga
tactgtgagaagttgaggcatgatatgagccgggacacctgcttcatcatgtcatacagc
cagcaggaggagacccgtctggaggagctatacactgacacactgatggagctgttgaac
gaccgcaatgaaagtctgggcttcttggagagtctggaccagctcctaggagaccatgca
gtcttcaatacccaaggtgaaatcatctatgtgatgggggatgccggtgtgggaaaatcc
atcctcctgcagaagctccagaacctctggtccaagaaagagctgcagacggacaccatc
ttcttctttaagttccgctgtaggatgttcagcatcttcaaggacacagaacagatctcc
ctcagagaccttttgttcaaatacaactgctacccagatcaggatccagataatgaggtg
tttgactacatcctgcgcttccctgagaaggttctttttacatttgatggctatgatgag
attcaggaggatctagacctgatgaatgttcctgaagtggtgtcaccagaagacaaggca
caccccctccagctgctcatcagcttgctctgtgggaaactactcaagggctcccagaag
gtgctgacagcccggacagggatccagattcagagtaaggtgatcagaaaaaaggtggct
ctgaaggggttctccccagctcatctgaagacctacattgatctgcactttaaggagcag
gagcaccgagagctggtgtcagttcagctggatgctagcccccacctctgcggcctgtgc
tccaccccgctgttctcctggattgtattcaagagctttaggcacctgcacaccatgcat
gataattttcatctgcctgaaatctgcatcacactcactgacatcttcctcctgctgtct
gaggtgttcctcagccgcacagcctcacttgcaccatctctgctgaagaaaagcactcgg
tgtgcctcagagacattcaaagcaggcctcaggcctctcgccgcgtttgccaaactcgca
cttaagggtatggagagaggtagcttcatttgcagccaagaggagatcactgtgtgtggc
ctgacagaggaggacctgcccctgggctttcttagacctgtcagtgagtatgatgccagt
ggaagccctgctacatttgaattcctccatattaccctccagtctttcttggcagcgtgt
gctcttgtgttggatgagcaggatgctgccagctccatcctcaagttcttcacagagtgc
agcaggaaaagagaagcatcatgtctgccctttgacttctgtatcagtggctcttcaaag
cccagtgaaaaaaatccctttgcaaataatgaacaccttcagttcactaatctgttcttg
tgtggactgctgtccaaggctcacaccggcctgatggagcatttggtatctcctgtgtta
ttaaagaaaaaacgggccttactaaaatcctacctttccaccagtgtaaagtcccacctc
catggcttacctcactacaccggcgaagagggcgtgaaagttcatgttttgcccaacttc
ctgtggatcctgaggtgcatctttgagacagggagcaaagacatcgctcagatgacagcg
aaaggcatcacttctggcttcatcaagctgggttactgtaacgtgttctcaggtgactgc
accgccctgaactttgtactgcagcaccgtcagaagctcctggggcttgacatggacaac
aacaacatcagtgactatggagtgaagcagctgaggccctccttttgtaagatgacagta
gtgagactgtgcgtcaatcagctgtctgacagcagcattgaggttcttgcagaggagctg
tgtaagcacaaagttgtggaggtcttggggctttacaacaatcacatcacagatgttgga
gccaagctagttgctcagataattgaggaatgtccaaagctgcgaatggtcaagatcggt
aaaaacaagatcactagtgttggtgggaggtatttggccagcgcaattcagaagagcact
tctatattcgatgtgggaatgtgggggaacagcatcggcgatgagggagcggaagcattt
gcagaagctttgaggcaccacccaaggcttaccaacctcagtctctcagccaatggcatc
acatctaaaggcgggaagtgcctggcagaagcactgaagaagaacagcgtactcaggata
ttctggttagtgcagaatgagatgaccgacgatgcagccgcacactttgctgagttggtc
caagcgaacacaggtttaacccacctatggttaatcagcaaccagttcactgtggatggg
atcaaacactttgcagaggccctaaatcacaacacagcactcaaagagatatgtgtgaaa
ggaaaccagctctctgaagaggaagagaaacagtttgtgaccgagaaaaggctgcggttc
aactga
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