Siniperca chuatsi (mandarin fish): 122881273
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Entry
122881273 CDS
T08948
Symbol
bcan
Name
(RefSeq) LOW QUALITY PROTEIN: brevican core protein
KO
K06795
brevican
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
schu00535
]
122881273 (bcan)
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122881273 (bcan)
04091 Lectins [BR:
schu04091
]
122881273 (bcan)
Proteoglycans [BR:
schu00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
122881273 (bcan)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
122881273 (bcan)
Lectins [BR:
schu04091
]
C-Type lectins
Lecticans
122881273 (bcan)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
hEGF
EGF_TEN
I-set
EGF_2
Motif
Other DBs
NCBI-GeneID:
122881273
NCBI-ProteinID:
XP_044063212
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All DBs
Position
LG9:2529615..2559207
Genome browser
AA seq
1287 aa
AA seq
DB search
MKMKLDVLLPVLLCAICLLVLPSSSTPHHESDDSKLLQVTIPTTPPVFAVLGGSLTLPCL
VSLAHPPPSPSTNGRHAVLSLPRVKWSVLTHGREMEILVARGDRVRVSEAYKDRASLLNY
AYSPADLTLRLESLRQNDTGFYRCEVQQGLEDADDVAQVKVKGVVFHYRDASSRYAFTFE
QAREACEDIGAEIATPEQLLAAYHSGYEQCDAGWLSDHSVRYPIQMPREGCFGDMDGLPG
VRNYGLLEPDELYDVYCYVENIEGEVFHGSAPQRFTFWEAKAYCLSHGAELATTAQLYAA
WNEGLNHCSPGWLADGSVRYPIVTPRERCGGGEPGVRTVYRYSNQTGFPEVHTRHDVYCF
RSDNGPYTESPKDFLATEPEDIGQDIVFLTNPAQEELSLSEGTAKGGEEVQYAQTANPVK
QGPVEAQSPRLGYDKEPFLTVDLHQSVTPPSEHQEHLSTEDTLELIEKASYPDSYQPAPE
ESPDTDHEESHVLPTTSPKANGVVSVGEDFTLPTTDATTSESGELSEHHTSENESLNSPA
VNATSGTDANELLNSSPEVPQEGDLPVVQEDHTPDVHLEHTSETELVYPSTSYDVPGQPE
EASAGTVEEMSAVTTSPHTEETDVHSITLLPSFDNSTTENHPTEEESGEESANPLLDEET
QNSVTQSLVGMDPFATXELVPTSDSGYDPTEEHPGVTVALSIPVGHGDEESNSTSEEAAP
DDPANQSGHIHPAEMPTAEVTATDDSGSSVDAPVPNSDPVTLLTSPVSVTLSPPSVEVEA
ISPEIITFIPESNVSSGAEPLEDTPDKLDQEGLGENPEVFLSSTQNITDGDPEGREQDIR
EGSGESSGESPEVKPGLLLTNPTLSTHLTPEVTDGEAGTDAPPLSDVKITLIPHLTLTPG
WEPEPSSSTPPESRSDREYSAEPPVAEESDAVSKEQEVVAKITNSSNNEYGSEGGEGETS
TEEPSVKMCTWRPDEEETSSDVTVTAPTMYPEYFQKEGEEQAASQPAAKVSAARQGGISA
ADSCLENPCLNGGTCVDGESTRCLCLPGYGGDLCQTDMEACEPGWEKFQGFCYRHFTKRQ
SWEAAEQHCRMCGGHLISVMTPEEQDYINDKYREYQWIGLNDRTIEGDFRWSDGNLLLYE
NWYRGQPDSYFLSGEDCAVMVWHDGGSWSDVPCNYHLSYTCKKGVSSCGEPPKVPNAKVF
GKKRLRYETNTKVRYYCEEGFVQKLSPVIKCLPSGQWEEPLISCMPTHSMEEDSVTSLPY
QHEAVMEVMGTATEKAAPLFWDIKWNV
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatgaaactggatgtgcttctacctgtgctgctgtgtgccatctgtctcctcgtc
ctgccgtcgtcctctaccccccaccacgagtcagatgattccaagcttctccaggtgacc
atccccaccaccccgcctgtgtttgctgtgctgggcggctctctgacattaccctgcctg
gtgtctctggcccacccgccgccatccccctccacaaacggccgccacgccgtcctgtct
ctcccccgggtcaaatggagcgttctgactcacggccgagagatggagatcctggtggcc
cgcggcgacagggtgagagtcagcgaggcctacaaagaccgggcctcgctgctcaattac
gcctactcccccgccgacctcaccctgcggctggagagcctgaggcagaacgacaccggc
ttctaccgctgcgaggtgcagcagggcctggaggacgctgacgatgtcgctcaggtcaag
gtcaaaggggtagtgttccattatcgtgatgcatccagtcggtacgcctttacctttgag
caggccagagaggcctgcgaggatatcggggctgaaattgccactccagagcagctcctg
gccgcctaccacagcggatacgaacagtgtgatgcaggctggctctcagaccactcagtg
agatatcccattcagatgccaagagagggctgttttggggacatggatgggttgccagga
gtgaggaactatggactgttagagcctgatgagctgtatgacgtctactgctacgtggag
aatattgagggtgaagtgttccatggctccgccccccagcgtttcaccttctgggaggcc
aaggcctactgtctgagtcatggggccgagctggccaccacagctcagctatatgccgcc
tggaatgaaggactgaaccactgcagtccgggctggctggcagatgggagtgtgcgctac
cccatcgtcacccctagagagcgctgcggaggcggtgaaccgggggtcagaactgtctat
cgctacagcaaccagacaggcttcccagaggttcatactcgacatgatgtctactgcttc
agaagcgataacggcccttacactgaatctcctaaggattttcttgccactgagccagag
gacattggccaggacattgttttcttaactaatcctgcacaggaggagctcagcctgagc
gaggggacggcaaaggggggcgaagaggtccaatatgcccagacggccaatcctgtgaag
cagggccctgtggaggctcagtccccaagattgggttatgacaaggaaccgtttctgacg
gtagaccttcatcagtctgtcactcctccatctgagcatcaagagcacttgtccacagag
gataccttggagctcatagagaaggccagctacccagactcctatcagccagcacctgaa
gaaagcccagacacagatcacgaagagtctcacgtacttccaacaacttctccaaaggcc
aatggcgtagtaagtgttggtgaagatttcactttacccacaactgatgcaacaacttca
gagagcggagagctctcagagcatcatacgtctgagaatgaaagcctgaattcaccagct
gttaatgcaacatctggaactgatgcaaatgagctcctcaacagttctccagaggttcct
caggagggcgatcttcctgttgtacaagaggaccacactccagatgtccacttggaacac
acctctgaaactgagctcgtctacccgagcacctcttacgatgttccaggacagccagaa
gaggccagcgctggtactgttgaggagatgtcagcggtgactacttcaccccacactgag
gaaacagatgttcactccatcaccctgttgccgtcttttgacaacagtacgactgagaac
catccaacagaagaggagtctggagaggagagtgcaaatcctcttctagatgaagaaaca
caaaactcggtgactcaaagtttggttggtatggacccctttgccaccnctgaactggtc
cccacgtctgattcaggttatgatcctactgaagagcacccaggtgtaactgtagcgttg
tccatcccagtcggtcatggtgatgaggaatccaacagcacttcagaggaggcagcacca
gatgatccagccaaccagagtggacacattcatcctgcagaaatgccaacagcagaggtc
acagccacagatgactcaggctccagtgtcgacgctcccgtcccaaacagcgatccggtc
actttgttgacatcccctgtatctgtaaccctgtctcccccttctgtggaggttgaagct
atctccccagagattataaccttcatacccgaaagcaatgtttcatctggggccgaacct
ctggaggacaccccggacaaacttgatcaggagggattaggagaaaacccagaggttttc
ctcagctcaacccaaaatattacagacggtgatccagaggggagggaacaagatatcaga
gagggatcaggtgaatcatcaggagaaagcccagaggtgaaaccaggactcctgttgaca
aatccaactctctcaacacacctaactcctgaggtaactgacggtgaggctggcactgat
gcaccgcctctatcagatgtaaaaatcacactgatccctcatctgaccctcacaccgggc
tgggagccagagccttcttcttccacaccgccggagtctcgctctgatcgggaatacagc
gccgagcctcctgtcgctgaggaatctgatgcggtctctaaggagcaagaggtagtggct
aagatcaccaacagcagcaacaatgaatatggatcagagggaggtgagggggagaccagc
acagaagagccttcagttaaaatgtgcacatggcgtccggatgaggaggaaaccagcagt
gatgtgacagtcactgctcccaccatgtacccagagtattttcaaaaagaaggcgaggag
caggctgcctcccagcctgctgccaaagtttctgctgcaagacaaggaggcatttcagct
gcagactcgtgtctggagaacccttgtttgaatgggggcacttgtgttgacggtgaatca
acaaggtgcctttgcttgcccggttatggaggagacttgtgccagacagacatggaggca
tgtgagcctggctgggagaagtttcagggcttttgttatcgtcactttactaagaggcag
agctgggaggcggctgagcagcactgtcgcatgtgtggtggacatctcatttctgtcatg
acccctgaggagcaggactatatcaacgacaaatacagagaatatcagtggattggacta
aatgacagaaccattgagggagacttccgctggtcagacgggaaccttctgctctatgag
aactggtacagaggccagcctgacagctacttcctgtctggtgaggactgtgcagtgatg
gtgtggcatgacggcggcagctggagcgatgtgccgtgcaactaccacctgtcctacacc
tgcaagaagggtgtttcatcctgtggcgagccccccaaggttcccaatgctaaggtgttt
gggaagaagcggttgcgttacgagaccaacaccaaggtgcggtactactgtgaggagggt
tttgtgcagaaactgagtcctgtaatcaagtgcctgcccagtggccaatgggaggagcct
ctgatttcctgcatgccaacccattcgatggaagaagactcagttacctcacttccttac
cagcatgaggcggtcatggaggtcatgggcacagccacagagaaggcagcgccgctgttc
tgggacattaagtggaatgtctga
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