Siniperca chuatsi (mandarin fish): 122881570
Help
Entry
122881570 CDS
T08948
Symbol
col14a1a
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
schu00535
]
122881570 (col14a1a)
Proteoglycans [BR:
schu00535
]
Extracellular matrix (ECM) proteoglycans
Others
122881570 (col14a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
NDNF
VWA_3
DUF4959
Mid1
nSTAND2
Motif
Other DBs
NCBI-GeneID:
122881570
NCBI-ProteinID:
XP_044063834
LinkDB
All DBs
Position
LG9:17665099..17798865
Genome browser
AA seq
1872 aa
AA seq
DB search
MLSAGKIRWCLWAPLVLLALVSHFPSKAQGQVPVPRRLRFKVLSSSKLLVSWKEPKGDFD
SYLFLYNSIPGGQQREIIVSKSDTKVLITDYNPSKDYTVSVIAVSGSEQSRPLQGRHKAE
RGESDGGDKTEPQRKTDSVVPPEGANEISGVDQFVCHTEAIADIVILVDGSWSIGRLNFR
LVRMFLENLVNAFDVGIDKTRIGLAQYSGDPRIEWHLNAFSTKDAVIDAVKNLPYKGGNT
LTGLALTYILENCFKPESGSRVGIPKIGILITDGKSQDDVIPPAESLRNAGVELFAIGVK
NADENELYSIASEPDNTHVYNVADFNIMSSIVEGLTRTVCEQVEQQDKDIKQKQTPEKMG
APVDLVTSEVAARSFRVSWSRAPGNVEKYRVVYYPTQGGEPQEVVVDGSETSVVLQHLSS
LTEYQLAVFAVYANEGSEALRGSETTLALPTVTGLQLFDVTHNTMKARWDSVDGVSGYML
LYAPLTDGGDLDEKEVKVSDAVTELELERLIPHTEYTVTVYAMYGEEAGDPVTNQETTLP
LSPPSNLQFSDITHDSAHISWDPVPREVKGYRIVWVKTDGLVTKEVMVSGGNSYDLYDLT
SLMEYSVAIYTVYDEGQSEPLTDGFTTTPVPGPLNLNSNDVSTDSFQVSWGHSANDIVLY
RLSWAPFTGGETKEVVLSGSDNRYILTGLSPSTEYEVMLTAVFKDESESDTVSVVETTLA
KTTTIATTTTAARQAVRNLQLSDETTQSLEASWELDDHNVESYRVSYASLRGNHEEESVL
VPGGQRRAVLQPLLSDTQYKVTVTPMYTDGEDGISISALGATLPRLSPGNLRVSEEWYNH
FRVTWDPPQSPTVGYRIVYQPIYVPGPVLETTVGEDVNTMRLLNLLSGTEYSVQVMASYP
TGQSEPLLVNAKTLFLGVSGLSTYQVRSNSMCVQWQPLLHATLYRVFIQSTLNGQKQEVS
LGGGASRQCFYDLTPSSQYQISVHTQMQEMEGPSVSITDMTLPAPTQAPTERPTTEPPPT
IPPAKEVCKEAKADLAFLVDGSWSIGDDNFMKITRFLYSTMGSLDLIGPDGTQVAIAQFS
DDARTEFQLSSHGNKEELLEAIQRIRYKGGNTKTGRAIKHVKESIFTAEAGARRGVPKVL
VVLTDGRSQDDVNKVSKEMQMDGYIIFAIGFADADYGELVNIASKPSDRHVFFVDDLDAV
KKIEEQLITFVCEAATATCPSVLMSGNTMAGFRMMEKFGLVEKEYGTIPGVSLEPGSFNS
FPCYRLHRDALVSQPTKYLHPEGLPSDYTISMMLRLLPETPQEPFALWEILDKYNEPLVG
LILDNSGKTLTFFNNDYKGDFQTVTFEGNEIKKIFHGSFHKLHVTISKTSVKVVLDCSVV
GEKPVNAAGNITTDGAEILGRMVRSRGRRDNSAPFQLQMFDIICSTSWASRDKCCELPAL
RVEEQCPPMPHACTCSQDSKGPPGPSGPPGGPGIRGARGDRGEPGVTGPQGPVGEIGPPG
PSGPPGPQGPSGLSLQGPPGAAGEKGERGEIGPAGQMGVPGSPGSPGRDGPPGARGLPGN
NGPQGRQGPPGPIGSPGAPGAPGSGGSAGPQGDQGLPGPAGTKGDKGERGDVQSQAAVRA
IARQVCEQLIQSHLSRYNSILNQIPVQSSVSVRTVPGPPGEPGRRGPPGPQGEQGPSGRP
GFPGSNGQSGRPGERGLPGEKGERGNPGVGSQGPRGPPGPPGLPGEGRTGSQGPPGRPGN
PGTPGRSGNPGSTGPAGPPGYCDQNSCLGYNVGVQPLPHGGYQPYNPAAVAYNNDQGRED
EEEEGEEEQDPYYRGYPPQYYPQQPSQLAYGHHGYRSSPTHSEDTELRSPGVARRFPRDV
VVIMEESEEGGL
NT seq
5619 nt
NT seq
+upstream
nt +downstream
nt
atgttgtcagcggggaagattaggtggtgtttgtgggctccactggtgttactggcccta
gtttcacattttcccagtaaggcacagggtcaagttccagttccaaggaggctgcgtttc
aaagtgctgagctcaagcaaactcctcgtttcatggaaggagcccaaaggagactttgac
agctatctattcctctacaacagtataccaggtggtcagcagagggagatcatagtatct
aaatctgacactaaagtgttgataacagactacaacccctctaaggactacactgtcagt
gtcattgctgtcagtggcagtgagcagagcagaccgcttcagggcagacataaagctgaa
agaggtgagagtgacggaggagacaagactgagccccagaggaagactgattcagttgta
cctcctgagggtgccaacgagatctctggagttgatcagtttgtgtgccacactgaggcc
attgcagacattgtgatcctggtggacggctcctggagtattggtcggctcaacttccgg
ctggtccgaatgttcttggaaaaccttgtcaatgcctttgatgttggcatagataagaca
aggataggtctggctcagtacagtggtgatcccaggatagagtggcatcttaatgctttc
tccactaaagatgccgtcattgatgctgtcaagaacctgccctacaagggaggaaacact
ctcacaggccttgcattgacctatatcttggagaactgtttcaagcctgaatctggctca
cgggttggtatacccaagattgggatcctcatcacagacgggaagtcccaggatgatgtc
ataccacctgcggagagcctgcgaaatgctggtgttgagctgtttgctattggtgtgaag
aatgctgatgagaatgagttgtactccatcgcctcagagccggacaacactcatgtctac
aatgtggctgacttcaacattatgagctccatagtagagggactgaccagaacagtgtgc
gaacaagtggagcagcaagacaaggacatcaagcagaaacagacaccagagaagatgggg
gcaccagttgacctggtgacatcagaagtggcggcccgaagctttcgggtttcatggagc
cgcgcccccggaaacgtagagaagtacagagtggtttattaccctactcagggaggagaa
ccgcaggaggtggtagtggacggtagtgagacttcagtggtgttgcagcatctcagctct
ctcaccgagtaccagctggctgtgtttgctgtgtacgcaaacgagggaagtgaagctctg
agaggatcagaaacaaccctggcccttcccacagtgacaggcctccagctgtttgatgtg
actcacaacaccatgaaagcaagatgggacagtgtggatggagtctctggctacatgctg
ctgtatgcaccgcttacagatggtggagacttagatgagaaggaggtcaaggtatcggat
gcagtgacagagctggagctagagaggttgatccctcacactgaatacaccgtcactgtt
tatgccatgtacggagaggaagccggtgaccctgttacaaaccaagaaaccacattaccg
ctgagtcctcccagcaacctccagttctctgatatcactcacgactccgcccacatcagc
tgggaccctgtgcccagagaagttaaaggttaccgcattgtgtgggtcaagacagacgga
ctagtcacaaaggaggtgatggtgagtggtgggaactcctatgacctttatgacttgaca
tctctgatggagtactcagtggctatctataccgtgtacgacgagggccaatcagagccg
ctcaccgacggattcactactactccagttcctggtcctttgaatctgaactccaatgat
gtcagcacagacagcttccaggtcagctggggtcactcagccaatgacatcgtcctctac
agactctcctgggcaccgttcacaggtggcgaaacaaaggaggtggtcttgagtggaagt
gataacagatacatcctgaccggtctgagtccgtctactgagtacgaagttatgttgacg
gctgtattcaaagatgaatctgagagtgacacagtctctgttgtagagaccacattggcc
aagacaacaacgattgctaccacaaccacagcggcacgtcaggctgtgagaaaccttcag
ctgagtgacgagaccacccagagcttagaggcatcatgggagctggatgaccacaacgtg
gagagctacagggtctcctacgccagcctcaggggcaaccacgaagaggagtctgtgtta
gttccaggtggtcagaggagagcagtgcttcagcctttactatcagacacccagtacaaa
gtgacagtcacaccgatgtacaccgacggagaagatggtatcagtatctcagccctgggt
gccacattgccccgcttgtctcctggaaacctacgtgtgtcagaggagtggtacaaccac
ttcagggtcacctgggatccacctcagtctcctacagttggttacaggatcgtctaccag
cccatctatgttccaggaccagttttggagacaacagtgggtgaagatgtgaacaccatg
cgcctcctgaatctactaagtgggacagagtacagtgttcaagtgatggcctcctaccca
acagggcaaagtgaaccactgctagtgaatgccaagacattgttcctcggtgtctctggc
ttgtcaacttaccaggtacgttccaacagcatgtgtgtccaatggcagcctcttctacat
gccacattatacagagtcttcatacagtctacactaaatggtcagaagcaggaggtgagc
ctaggaggtggtgcttcccgacagtgcttttatgacctcactcccagcagccaataccag
atcagcgttcacacccagatgcaggaaatggagggaccttctgtctccatcactgacatg
acactaccagcgcccactcaagctccgactgaacgccccaccacagagccccctcccacc
atcccgcctgctaaagaagtgtgtaaggaggccaaggctgacctggcattcctggtcgac
ggttcctggtccatcggagacgacaacttcatgaagattacgcgtttcctctacagcacc
atgggatctctggatctgattggaccagatggcacccaggtggccattgctcagttcagt
gacgatgctcggacagaattccagctgagttcccatggcaacaaggaggagttgctggaa
gctattcagaggatcagatacaagggaggaaacaccaagacaggtcgggccattaaacat
gtgaaggagtctattttcaccgcagaggccggagctagaagaggcgtccctaaggtcctg
gttgttctcactgatggacgttcgcaagatgatgttaacaaagtgtccaaggagatgcag
atggatggctatatcatctttgccattggctttgcggacgcagactacggggagctggtg
aatattgccagtaagcccagcgacaggcacgtcttctttgtggacgatttggatgccgtg
aagaaaatagaagagcagctcattacttttgtctgtgaggctgccactgccacttgtccg
tctgttttgatgagtggtaacacaatggcaggtttccgtatgatggagaagtttggccta
gtagagaaggagtacggcaccatacctggagtttctctggagccaggttcattcaacagc
ttcccctgttatagattacaccgtgacgccctggtgtcacagcccaccaagtaccttcac
cctgaaggtttaccctctgactataccatttctatgatgctccgtctacttcctgagacc
ccgcaggagccctttgcattgtgggaaatcctcgacaagtacaatgagccattggtggga
ctgatcctggacaactcaggaaagaccttgacattcttcaacaatgactacaaaggagac
ttccagaccgtcacctttgaaggaaatgaaataaaaaaaatcttccatggcagcttccac
aagctccatgtaaccatcagcaagacatctgtgaaggtggtgttagattgttctgtggtt
ggggagaaacccgtcaatgctgctggtaacattaccactgatggagcggagatccttgga
aggatggttcggtccagaggcagacgggacaactctgctccattccagctccagatgttt
gacatcatctgcagtacatcctgggccagcagggataagtgttgcgagctgccagcattg
agagttgaggagcagtgccctcccatgcctcatgcctgtacctgctcccaggacagcaaa
ggacctccaggaccttccggaccccctggcggtccaggcataaggggagccagaggagac
agaggagagccaggagtgacggggcctcaagggccagtgggagagattggccctcctgga
ccctcaggaccgcctggtcctcagggacccagtggtctctcacttcaggggcccccgggt
gctgctggggagaagggagagagaggagagatcggtccagccggacaaatgggtgttcct
ggaagcccgggctcccctggtagagacggccccccaggagcaaggggtctgccgggtaat
aatggaccacagggacggcaaggacctcctggacccattggatccccaggagcaccggga
gctccaggatctggtgggtcagcagggccccaaggagatcaaggacttcctggtcccgct
ggtaccaaaggcgataagggagaacgaggtgatgtgcaatcccaagctgctgtgcgtgcc
atcgcacggcaagtgtgcgaacagctcatccagagccacttgtctcgctataactccata
ctgaaccagatccccgtccagtcgtcagtgtcagtccgaacagttcccggtccgcccgga
gagccgggtaggagaggccccccaggacctcagggagagcaaggcccatccggcaggcca
ggcttccctggtagcaacggccagagcggacgaccgggggagagaggtctgccgggagag
aagggagagagggggaatccaggggttgggagtcagggacctcgaggaccacctggacct
ccaggcctgccaggtgaaggacggacaggcagccagggtccccctggtcggcctggtaac
ccgggaacaccgggaaggtcggggaatccaggtagcacaggaccagctggcccaccagga
tactgtgaccagaactcctgtctggggtacaacgtcggagtccaacccctgcctcatggc
ggctaccagccatacaaccctgctgcagtggcttacaacaatgaccaaggacgcgaagat
gaggaggaggagggggaggaagagcaggacccctattaccgtggttacccccctcagtac
tacccccaacaaccctcccaactggcctatggccaccatggttaccgctcgagccccacc
cactctgaggacacagagctgaggtccccgggcgtcgccaggaggtttccgcgtgacgtc
gtcgtcatcatggaggagagtgaggagggaggactttag
DBGET
integrated database retrieval system
