KEGG   Siniperca chuatsi (mandarin fish): 122881994
Entry
122881994         CDS       T08948                                 
Symbol
mdc1
Name
(RefSeq) mediator of DNA damage checkpoint protein 1 isoform X1
  KO
K20780  mediator of DNA damage checkpoint protein 1
Organism
schu  Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:schu00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:schu03400]
    122881994 (mdc1)
DNA repair and recombination proteins [BR:schu03400]
 Eukaryotic type
  Check point factors
   Other check point factors
    122881994 (mdc1)
SSDB
Motif
Pfam: BRCT_2 RTT107_BRCT_5 FHA BRCT
Other DBs
NCBI-GeneID: 122881994
NCBI-ProteinID: XP_044064777
LinkDB
Position
LG9:complement(11256791..11268832)
AA seq 2074 aa
MCIYFFIYFFIFTEQGKACEAVVLLYPVCGMDATQMISDSILESDEEENEEENGNKRGRP
LAKLCILKNEYIPETELPLFLGDNVLGRDPNTCTLPLPAPSISKQHATICLSVYRRRGCH
SEVDIEALVWDLGSMNGTRKGRLKLTPNVRYALSESDSLVVADIPCQYVSCAVDGVSSEG
DMRTPVSRNSGLKTRLPDTSEEKRVDTSTGSKKHVNGGCLSFEQTPTQPQGTLVPESDTD
SDGERGGEGDRRRKALVSDSDSHKSSPTCSTFLSPTNKIVPESEDESPITPYSTKNRPFR
HVSFSKEGTDVDVGRQELKEKKALAIVDDSEEEEGREEERAALGGRKSEESGQHVPVKQE
SNVSLTGVDELPVSTPAVFTDAIPAFNVDSDTDVEGEEEEVVSVGPVTLNTNQQADQPPN
TAQFLIDSDTDVDDDDDALDKVPKSMPFSADNTRPPHVISVIQPEAITMDSDTDVDDDAV
VSDAATKAKPMSFQSTHTAAPSMQLKDFHLDSDTDVDEEEEKESGTNKTCPKIDETPTRL
DIKPIGPESAPATPHSLHLDTDTDDEAIPAPAIGEPLVVSGVTESCTTADTGADLDILSD
SDTDMEDNSPLVVPVVVTTLSVAPGTTSEAFQSDSDADTDVDDSSVPPSGDGVNPADPKV
DSDTDVEDKEVDFGEAGEGQIPSLRGENTPGLLAPLLQNCSTPVQLTEVEDMETQAFLSP
SSGPFRRTVAPAVRPKALSSCSDSQEDEDFVVAETQSFVLQTRDGQRNPPGDHTMDPTKA
FGLESSGDEKVEQSSRGGSFQLGLSDSSRLQGQAQALAMESTQAFLSVEGGVNLEDTQTY
AAISNANRTSLENDSNLEAKAYGEDDEPARCSVMSEKEGQVDLALEATQAYISEPYSDSE
DETDEDERKNTATAETQPLDFPTSSTLAMAETQPMSAFEEEESLDKENPLSSVFQVKPKP
QNETEEREEHGEAAQPQERHLTEALSVAETQPMATSGNEESDDEDLILGPRKRKAKPLQL
EEEQTQPLISSETQPMATSGNEESDEDSILGPRKRKAKLLQLEEEQTQPLISSETQPMAT
SGNEESDDEDSIPGPRKRRAKPLQIQEQETQPLTNSEASTVETQPLETKATLWPQRGKGR
QFEAATSGIIVRDKRGTRAKLREEEEQAECSEPPKRQTRGKNKALPTTRGRRGKSRPDES
EEEEEVEQAKQARGKKSMRQWKDDKEEGERLETERNKYDENNSLIKEQVEGRLGEEKDVT
ELRQQERERMEKERAEINERERKQEERQHRREEQEKLERKEKEEQERSQAENAERLRLEQ
ERAEQERIERERKEEEEKERADRTQKEKELLERERKEKEEKETLEREKAEREEREILERE
EKERIEKERKEQEEKERLETEKRELEEKHERERLAKEKQIKEQQENKEEENKPKAPARSR
RSARRTIDTPCATEPEQDSTISTNDDVPARRTRSRSNSSNSVSSERSASSVNTQQSQRGR
GRGARRTSEPPQAAIARSSNRRRMVAAEPTEQDSNDISPQGVLSRSNSTKSLNSEISSYS
LSSQSRGRGGRQRGRGRKTEAATILPINSQSDQNSAPKPSTRGRKCRKAEESSNEVTHED
DKEKTDSQQASTTRGRRRANANGSEPAEDPSNQEEGCASEESFLPKRNVRGRGQKAVKSE
TVEAPVAPAVSDGDEAKEKRKGRKRELEANTEDDSSSSSKISKGKEKVQTTEPADEGAKG
ETKDEIPLQAKRGRVSSTQAKKNAKDYPTEVEVEEESEKMEEEAVERRGRGRPSAVKKKK
KEEPEESGTCVDQDAHMEASEPQTPTSSVSRKRQALVDSSPVAKTPRSSFAATAASGRLR
VASQTYKVLFTGMVDETGERVLARLGGCIAKGMADMNCLVTDKVRRTVKFLCAVAKGVPI
VTTHWLEKSGKAGSFLSPNDFIVKDPEQEKKFIFCLQESLRIAGSQPLLQGYEIHVTKSV
KPEPVQMKDIITCSGATFLPKMPTSHKPQTVVISCEEDWPLCGPALSASIPVVTAEFILT
GTLQQKLNFQTHSLSAPTSNLPTAGGRGRGRKKT
NT seq 6225 nt   +upstreamnt  +downstreamnt
atgtgtatttacttttttatttatttttttattttcactgagcaaggcaaagcgtgtgaa
gcagtcgtcctgctttaccctgtgtgcggaatggatgcaactcagatgatcagtgactca
atcttggagtcagatgaggaagaaaacgaagaggaaaatggaaataagaggggacgacca
ttggctaaactgtgcatcttaaaaaatgaatacatccctgagacagagttgcccctcttt
ttgggagataatgtgctgggccgtgaccccaacacctgcaccctacctttgccagcaccc
tcaatatccaagcagcacgctaccatctgcctctctgtctaccgtagaagaggttgtcat
agtgaagtggacatagaggctttggtttgggacctagggagcatgaatgggacccgcaag
ggtcgcttaaagctgactcctaatgtacgctatgccctcagtgaaagtgacagtttggtg
gtggcggacatcccatgtcagtatgtcagctgtgctgtagatggagtctcttctgaagga
gacatgaggactcctgtgagcagaaattcagggctaaagacgaggctgccagatacctca
gaagaaaagagagttgacacaagcacaggcagcaaaaaacatgtcaatggtggttgcctg
tcctttgagcaaactccaacccagccgcaggggaccctggtcccagaatctgacacggac
tcagacggggaaagagggggagaaggcgatagaaggcgcaaggctctagtgtccgattct
gactcccataaatccagtcccacttgttcaacattcttgagtcccacaaacaaaatagtc
cctgaaagtgaggacgaaagtcccatcacaccgtactccactaaaaataggcctttcaga
catgtcagcttcagcaaggaggggacagacgtagatgtggggcgacaggagctgaaggaa
aaaaaagcacttgcaattgtggacgacagtgaagaggaggaaggaagggaggaagaaaga
gcagccctaggagggagaaagtctgaggaaagtggacaacatgtgccagtaaaacaggaa
agcaatgtcagtcttacaggagtagatgaattgcctgtatctacaccggcagtcttcaca
gatgcgatccctgcatttaacgtggacagtgacactgatgtggagggagaggaggaagag
gtggtatctgtgggtcctgtgaccttgaatacaaaccaacaagctgatcaaccaccaaac
acagctcagtttctaattgacagtgatacagatgtcgatgatgatgatgatgccttagac
aaagttcccaaatcaatgcctttttctgctgacaacaccagacctcctcatgttatttca
gttattcagccagaggccatcactatggacagtgacactgatgtggatgatgacgctgtt
gtgtcagacgctgctacaaaagcaaaacccatgtcatttcagagcacacacacagctgct
ccctcaatgcagctgaaagatttccacctagacagtgacacagatgttgatgaggaagaa
gaaaaggaatctggaacaaataagacgtgccctaaaatagatgaaacccccactagatta
gatatcaagccaattgggcctgaatctgcccctgccactcctcacagcctgcatctagac
actgacacagatgatgaagctattcctgcccctgccatcggtgaacccttggtggtgtct
ggtgtcacagaatcatgcactactgcagacacaggagctgatttggatattctgtctgac
agtgacacagatatggaagacaattctcctctggttgtacctgttgttgtcacaaccttg
tcagttgctcctggtaccacgtcagaagcttttcagtcagattctgatgcagacacagat
gtggatgattccagcgtgcccccttccggggatggggttaatccagccgaccctaaagtg
gacagtgacacagatgtggaagataaggaggtggattttggagaggcaggtgagggccag
attcctagcctgcgcggagaaaatacacctgggttgctggctccccttctgcagaactgc
tctactcctgtacaattgacagaagtggaagatatggagactcaggctttcctgagtccc
tcttcaggtccctttagacgtacagtagcccctgctgtaagacctaaagcattgtcttcc
tgctcagacagccaggaggatgaggactttgtcgtggctgagacgcagtccttcgttctt
cagaccagagatgggcagcgaaaccctccgggggatcacaccatggatcccaccaaagct
tttggccttgagtcttctggtgatgaaaaagttgaacagtccagcagaggagggtctttc
cagctgggattgtctgatagcagccgcctgcagggtcaggcccaagctctagccatggaa
agcacccaagcttttctctctgtggaagggggtgtgaatctggaagacacccaaacatat
gcagctatctcgaatgcaaacagaacctccttagagaatgattcaaatctggaggctaag
gcatatggagaggatgatgaacctgccagatgttcagtaatgtctgaaaaagaaggtcag
gtagatttggccctagaagcaacacaggcatatatttcagagccctacagtgattcagag
gatgaaacagatgaagatgagagaaaaaacactgctactgctgagactcagccattagac
tttcccacatcatctactcttgccatggctgaaacccaaccaatgtctgcctttgaggaa
gaggagagtttggataaagaaaatcctctttcctctgtatttcaagttaagcccaaacca
cagaatgaaacagaagagagggaagaacatggggaggcagctcaacctcaggagaggcac
ctcactgaagctctgtctgtagctgaaactcagcccatggctacaagtggaaatgaggaa
agtgatgatgaggatttgattctcggcccacgaaaaagaaaagcaaagccactccagctt
gaagaggagcagacacagcccctcattagttctgaaactcagcccatggctacaagtgga
aatgaggaaagtgatgaggattcgattctcggtccacgaaaaagaaaagcaaagctactg
caacttgaagaggagcagacacagcccctcattagttctgaaactcagcccatggctaca
agtggaaatgaggaaagtgatgatgaggactcgattcccggtccacgaaaaagaagagca
aagccactgcaaattcaagaacaggagacacaaccgctcacaaattctgaggcctccact
gttgaaacacagccattggaaacaaaagctaccctgtggcctcagaggggaaaggggaga
caatttgaagctgcaaccagtggcatcattgttagagataaaagagggacccgggcaaaa
ttaagagaagaggaggagcaggcagagtgttctgaacctcccaagagacagacaagaggg
aagaataaagcattgccaactaccagaggaaggagaggaaaatcaaggcctgatgagagt
gaggaagaggaggaggtagagcaggctaagcaagctagagggaaaaaatccatgaggcaa
tggaaagatgataaggaagagggagaaaggcttgaaacagaaagaaacaagtatgatgaa
aataacagcctaataaaggaacaagtagaagggagattgggagaggagaaagatgttaca
gagctcagacaacaagagagagaaagaatggagaaggaaagggcagagatcaatgaaaga
gaaaggaaacaggaggaaaggcagcataggagggaagaacaagaaaaattagaaagaaaa
gagaaggaagaacaagaaagatcgcaggctgaaaatgccgaaaggttaagacttgagcag
gagagagcagaacaagagagaatagagagggaaagaaaggaagaagaagaaaaggaaaga
gctgataggacacaaaaggaaaaagaactactggagagggaaagaaaagagaaggaagaa
aaagagacattagagcgtgaaaaggctgaaagagaagagagggagatattggagagagaa
gagaaagagagaatagaaaaggaaagaaaggaacaggaagaaaaagaaagattggagaca
gaaaagagggaactagaagagaaacatgagagggaaagactggccaaagaaaaacaaata
aaagagcaacaagaaaacaaagaagaagaaaacaagcccaaagcacccgcaagaagtcga
agatcagccagaagaacaattgataccccatgtgcaacagagccagaacaagactcaacc
atatcaaccaatgatgatgtcccagcaaggagaaccagatctcgctccaactcttccaac
tctgtcagctcagagaggtctgcttcaagtgttaacacccagcagagccagagaggccga
ggcagaggagcaaggaggaccagtgagccaccccaggcagccatcgccagaagcagtaat
agaaggaggatggtggctgcagagccaacagaacaggacagtaatgatatttctcctcag
ggagtcctttcaaggtctaactcaaccaagtccctcaactctgagatttccagctacagc
ctaagctctcagagcagaggaagaggaggcaggcagcgaggacgagggaggaaaacagag
gcagccaccatccttcctatcaatagtcagagtgatcagaattcagctcccaaaccttca
accagaggcaggaagtgcaggaaagcagaggaatcctctaatgaggttacccatgaagat
gataaagagaagacagactctcagcaggctagtaccacaagggggcggcggagagccaac
gcaaatggctctgaacctgcagaagacccttcaaatcaggaggaaggatgtgccagtgaa
gaatcatttctgcctaaaaggaatgtcaggggcagaggccagaaagcagtaaagagcgag
actgtggaagcaccagtagctcctgcagtcagtgatggagatgaggctaaagagaaaaga
aaaggaagaaaaagagagttggaggcaaatacagaagatgattccagcagtagctccaaa
atttccaaagggaaggagaaagtccaaacaacagagccagcagacgaaggagcaaaaggt
gaaacgaaagatgagattcctctccaagctaagagaggtagagtgtccagcactcaagca
aagaagaatgcaaaagattaccccactgaagtggaggtggaagaagagagtgagaaaatg
gaggaggaggctgttgagagaagaggcagaggtcggccatcagcggtcaagaaaaagaag
aaagaggagccggaagaaagtggaacatgtgttgatcaggatgcacacatggaagcatca
gagccccagactccaaccagcagtgtatccaggaagcgacaggctcttgtggactcctcg
cctgtggcaaagacccctcgctcctccttcgctgccacggcagctagtggtcgattacga
gttgccagccagacctacaaggtgctgttcacaggcatggtggatgaaacaggggagaga
gtgttggctcgtttaggaggctgcatagctaaaggcatggctgacatgaactgtctggtc
actgataaggtgcgcaggactgtcaagttcctgtgtgcagtggctaaaggagtccctatt
gtcaccacgcactggctggaaaagagtggtaaggctgggagcttcctgtctcctaatgat
ttcattgtgaaggatccggagcaggagaagaagttcattttctgcctgcaggagtctctg
aggattgccggcagtcaacctctcttacagggatatgagatccatgttacaaagtcagtg
aagccggagccagttcaaatgaaagacataatcacctgcagtggagctacctttcttcct
aagatgcccacttctcacaagcctcagactgtagtgatttcttgtgaggaggactggccg
ctatgtggcccggctctctctgcatctatcccagttgtcactgctgagttcattctcaca
gggacccttcagcagaaacttaactttcagacccactcgctctctgctcctacaagcaat
ctgccaactgcaggaggcagagggaggggcaggaagaagacttag

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