Siniperca chuatsi (mandarin fish): 122882044
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Entry
122882044 CDS
T08948
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122882044 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122882044 (u2af2a)
Spliceosome [BR:
schu03041
]
Complex A
U2 snRNP components
U2 related factors
122882044 (u2af2a)
Complex B
122882044 (u2af2a)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Transformer
Motif
Other DBs
NCBI-GeneID:
122882044
NCBI-ProteinID:
XP_044064949
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All DBs
Position
LG9:12164130..12173113
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AA seq
476 aa
AA seq
DB search
MSDFDEFERQLSENKQAERDKENRHHRRSSSRSRSRERKRRSRDRDRRSRDRRGDSKERR
HRRSSPTSFPQDNAGSRSPHREKKKKVKKYWDVPPPGFEHITPMQYKAMQAAGQIPATAL
LPTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQA
PGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN
PSVYVPGTQTINGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA
TGLSKGYAFCEYVDVNLNDQAIAGLNGMQLGDKKLLVQRASVGSKNATLTSINQTPVTLQ
VPGLNSSVTQMGGLPTEVLCLMNMVAPEELLDDDEYEEIVEDVRDECSKYGQVKSIEIPR
PVDGLEVPGTGKIFVEFMSVFDSQKAMQGLTGRKFANRVVVTKYCDPDAYHRRDFW
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaattcgaaagacagctctctgaaaacaaacaagctgaaagggac
aaagagaaccgccaccaccgccggtcctcctcccgcagccgtagcagagagaggaaaagg
aggagcagagacagggatagacgcagcagggaccgccgaggggacagtaaggagcgcaga
cacagacgcagctcaccaaccagcttcccccaggacaatgctggaagccgttctccacac
cgtgagaagaagaagaaggtgaagaagtactgggatgtccctccacctggtttcgaacac
atcacgcccatgcagtacaaagccatgcaagctgcaggccagatcccagccacagccctc
ctgccaaccatgactccagatggcctggctgttactcccactcctgtacctgtagtggga
agccagatgaccaggcaggcccgccggctctacgtgggcaacatcccctttggtatcaca
gaggagtccatgatggacttcttcaatgcccagatgcgtttgggtggtcttactcaggcc
cctggaaaccctgtccttgcagtacagattaaccaggataagaattttgccttccttgag
ttccgttcagtggatgaaacgacacaggccatggcctttgatggcatcatctttcaaggc
caaagtctcaagattcgtcgtccccacgattaccagcctctgcctggcatgagcgagaac
cccagtgtctatgtgcctggtacacagacaattaatggtgtggtgtccacagtggtgcct
gactcggctcacaagctctttattggtggcttgcccaactacctgaatgatgaccaggtg
aaggagctgttgacgtcatttgggcccctgaaggccttcaacctggtgaaggacagcgcc
acaggcttatctaaaggatatgccttttgtgaatatgttgatgtcaaccttaatgaccag
gctattgctgggctgaacggcatgcagctgggagacaagaaactcctcgtgcagagagcg
agtgtgggatccaagaacgccaccctgacaagtataaaccagaccccagtgacgctgcag
gtgccaggtctgaacagctcagtgactcagatgggtggcctgcccactgaggtgctgtgt
ctgatgaatatggtggcccctgaggagctgctggatgatgatgaatatgaggagattgtg
gaggacgtcagggacgagtgcagcaagtacggccaagttaagagcattgagatacctcga
cctgtggacggcctggaggtgcccgggactggcaagatctttgtggagttcatgtcagtt
tttgactcccagaaggccatgcaggggctgacaggaaggaagtttgccaacagggtggtg
gtaaccaaatactgcgatccagacgcttatcaccgccgggacttctggtag
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