Siniperca chuatsi (mandarin fish): 122882204
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Entry
122882204 CDS
T08948
Symbol
rorc
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
schu03000
]
122882204 (rorc)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
schu03310
]
122882204 (rorc)
Transcription factors [BR:
schu03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
122882204 (rorc)
Nuclear receptors [BR:
schu03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
122882204 (rorc)
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
122882204
NCBI-ProteinID:
XP_044065290
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Position
LG9:complement(13792288..13812317)
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AA seq
528 aa
AA seq
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MFSNACAGPGARTTNRATQCFDRRVMEYEEPEVPPADAPFKRGGAMSKKTHLTQIEVIPC
KICGDKSSGVHYGVITCEGCKGFFRRSQLPTVSYSCSRQSNCQIDRASRNRCQHCRLQKC
LAQGMSRDAVKFGRMSKRQRDSLIAEVERHRQQQQQQQQLQGDTQSVLSYPTKARQDRSP
QLLQPVTYSFTGEAELLPYTADVHPYLVCSPNESHVSGMISRGSGVSPTLRSQGRGDNSG
HPDIRGFDSRQPSHDLMGIHPYNHLEDPYSLYPLSLRNIDELCVSIVRSHRETSQYRVEE
LHALRWKLFNREEIQAYQSKSVDEMWQHCAIRLTDAVQYVVEFAKHIPGFRMLSQNDQIA
LLKSGSMEVVLVRMSRFFNTENNTVFFDGKFAGVEVFKSLACGDLITSVFDFAHDMCALK
LTEYQIALFSALVLISTDRPCLEDRGRVQRVQRSVELGLTHILHRDNQESLMHKLYQKMA
VLRSLCNLHMEKLRWFSQRHPLTAHSLFPPLYKELFASEAELLPGTTH
NT seq
1587 nt
NT seq
+upstream
nt +downstream
nt
atgttttcaaatgcctgcgccggcccgggcgctagaacaaccaacagggccacccagtgt
ttcgacaggagagttatggaatatgaggagcccgaggtgcccccagctgacgcccccttc
aaaagaggaggagccatgtccaagaagactcatttgacccagattgaagttatcccatgc
aagatctgcggtgataaatcctctggagtgcattatggagtcatcacttgcgagggctgc
aagggatttttccggcgcagccagctgcctactgtatcctactcctgctccagacagagc
aactgtcagatcgaccgggccagtcgcaaccgctgccaacactgccgtctgcagaagtgc
ttggcacaaggcatgagcagagatgctgtgaagtttggacggatgtccaaacgtcaacgg
gactctctgatcgctgaagtggagaggcaccgacagcaacagcagcaacagcagcagctt
cagggagacactcagtctgtcttgtcctaccccaccaaggcccgccaagaccggtcccca
cagctccttcagcccgttacctactccttcaccggggaggccgagctgctgccgtacacc
gctgacgttcatccttacctggtgtgttccccgaacgagtcgcatgtgtcaggtatgata
tcccgaggctccggtgtctctcccacattgagatcccaggggaggggggacaacagcgga
caccctgacataagaggatttgactccagacagccatctcatgatctgatggggattcat
ccttacaaccatctggaggatccttacagcctctatcctctctctctgagaaacatagat
gagctgtgtgtcagcattgtgcgttcccacagagagaccagtcagtacagagtggaggag
cttcacgctctcagatggaaactgttcaacagagaggagatccaagcctaccaaagcaaa
tcagtggatgagatgtggcagcactgtgccatccgactgaccgatgctgtacagtatgtg
gtggagttcgcaaaacacatccctggtttccgtatgctcagtcagaacgaccagatcgct
ctcctaaagagtggctctatggaggtggttctggtcagaatgagtcggttcttcaacaca
gagaacaacaccgtgttctttgatgggaaatttgctggagtagaagtcttcaagtcattg
gcatgtggtgatttgatcacgtcggtgtttgactttgctcatgatatgtgtgctctaaag
ctcactgagtaccagattgctctcttcagtgctctggtgctgatcagcacagatcgtcca
tgtttggaggacagaggcagggttcagcgagtgcaaagaagcgtggagttaggactcaca
cacattctacatcgagacaaccaagaaagtctaatgcacaagctgtaccagaagatggca
gtgttgcgttcactgtgcaatctgcacatggagaagctgcgctggttcagtcagcgtcac
cctctcactgctcactctctgttccctccactctacaaggagctcttcgcctctgaggcg
gagctgctgccggggaccactcactga
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