Siniperca chuatsi (mandarin fish): 122882308
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Entry
122882308 CDS
T08948
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122882308 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122882308 (smarcc1a)
03036 Chromosome and associated proteins [BR:
schu03036
]
122882308 (smarcc1a)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122882308 (smarcc1a)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122882308 (smarcc1a)
PBAF complex
122882308 (smarcc1a)
GBAF(ncBAF) complex
122882308 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
Chromo
Motif
Other DBs
NCBI-GeneID:
122882308
NCBI-ProteinID:
XP_044065508
LinkDB
All DBs
Position
LG9:complement(4364560..4394375)
Genome browser
AA seq
1125 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGCGTAVGRKKDGGPSTKFWESSETISQFETVRQWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAGGALCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQASK
LKDIIKRHQGSITDDKSKATHHIYPSPSQQEEDEWLRPVMRKDKQVLVHWGLSPDSYDTW
VSASEVDGDVEDPPSTDRPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKPVNFRQRIFPK
EEESSRTPDRKERKANSAGKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSMSKNANSKKDSENTPVKGGNVADLDDMEDDSVLSGGKD
DEEQSKAEINRLMDAGEDNVTEQTHHIIIPSYSAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIFLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAD
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPPQQMPSFADKGKDKSIDLQNFGLR
SDLYNKKNPKVKAVNSTREWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLR
LPIEDPYMESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETTEAEKIDT
DTDSQQADKAELKDEAEKPSESAEKSDKTEATEKVKKEGGEASEREEENEEGGEAKTAPA
DKDKEEAMETSSSEQEKDKEEKAATDEGEDKRKKLEHDIEEGNIATAAAAALASAATKAK
HLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAF
HMEQLKYAEMKARQQMEQQAAAVAAAAAQAQGQAPGSGPHSGPPPPGMHPGGPQPHHGAP
VPHHGGPPPGGAMHPSYPPMGHHPMAPHHPGQTGPMGPGQPIPGRMMPGPPSAGPPPGGM
PPMMPPRHPGAPNGMYPGPLPAQPEAVPPAAVGPPAPPSARVADN
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcaggcggaccggccaccggcccg
gtaggctgcgggaccgcagtgggacgaaagaaggacggcggtccgtccacgaaattttgg
gaaagttcagagacgatatcccagttcgagacggtgcggcagtggatcggcaagcactac
aagaagtatgtccagaatgactccccctccagtaaatccttggcgggtctggtggtccag
ctgctgcagttccaggaggacgcatttggacgcagggtcaacaatcctgctcttaccaag
ctacctgccaagtgtttcctggatttcaaggcaggaggtgctctgtgtcacatcttgggg
tcggtctacaagtttaagagcgagcaggggtggcgcagatttgacctgcagaatccttcc
cggatggacaggaacgtggaaatgttcttaaatgtggagaagaacttggtccagaacaac
tgcttgactcgacccactgtcttcctgtcgccggacatcgagcagaaacaagccagtaag
ctcaaagacatcatcaaaaggcaccagggctccattactgatgataagtcaaaggccacc
caccacatttacccatctccatcccaacaagaagaagatgagtggcttcgtcctgttatg
aggaaagacaagcaggtgctggtgcactggggtctctccccagacagctatgatacctgg
gtatcagccagcgaggtggatggggacgtggaggacccacccagcactgacagaccatgg
aaggtccatgccaaatgggttttagacactgatgctttcaatgagtggatgaatgaagaa
gactacgaggtggacgaaaacaagaagccagtcaacttccgccagaggatcttccccaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaattctgccggcaag
aagaggaggcgttcaccctcaccgcccagcactcctgctgaatcccgcaagaagggggga
aagaaggggaacccagggcctcactggaaacgacggggtcacagaggcgaagaggaggac
acggaggaagacatgaccaaggatatggacgactcctcagctggtgccagcatggaggag
ggcagcatgtccaagaatgcaaattcaaagaaagacagtgagaatactccagtgaaagga
gggaatgtggctgacttggatgacatggaggatgactctgtgctgtctggtggaaaggat
gacgaggaacagagcaaagctgaaatcaaccgactgatggacgctggcgaggacaatgtg
actgaacagactcaccacatcatcatccccagctacagtgcttggtttgactacaactgc
atccatgagattgagagaagagccctgcctgagttcttcaacggaaagaacaagtcaaaa
actccagagatattcctggcctaccgtaacttcatgatcgacacgtatcggctaaaccct
caggagtacctcacctccacctcctgtcgcaggaacttgaccggggatgtctgtgccatc
atgagggttcatgcgttcttggagcagtggggtttggtgaactaccaggtcgacgctgac
agtcgccctttgcccatgggccccccacccacaccccacttcaccgtgctggctgacaca
ccatctggcctcatgcctctgaaccaccgacccccaccgattccccctccacagcaaatg
cctagctttgcagacaaaggcaaagacaagtccatcgacctgcagaacttcggccttcgc
agcgacctctacaacaagaaaaaccccaaggttaaagcagtcaactccaccagggaatgg
accgagcaggagactctactgctgctggaggccctggaaatgttcaaagatgactggaac
aaagtgtctgagcacatcggttcacgcacccaggatgagtgtattctgcacttcctgcgg
ctgcccattgaggatccatacatggagagcacagaggcctccctgggccctctggcctac
cagcccatacccttcagccagtctggaaaccccgtcatgagcacagtagccttcctggcc
tctgtggtcgaccccagagtggcatctgctgctgccagggcagccctagaggagttctcc
cgtgtgcgtgaggaggtgccggctgagttggtggaggctcacgtgaagaaggtgcaggag
gcggccaggagcacaggaaaggtggaccccgcctttggcctggaaagcagcggcatcgct
ggcaccgcccctgaggagccagaaaagactgaaaccacagaggcagagaagattgacacg
gacacagactcccagcaggccgataaggcggagttgaaggacgaggcagagaagccaagt
gagtctgcagagaagagcgacaagacagaggccacagagaaggtgaagaaggagggagga
gaggcgtcggagcgtgaggaggagaacgaagagggaggggaggccaagacggctccagca
gacaaagacaaggaggaggctatggagacatcgtcctcagagcaggagaaggataaggag
gagaaggcggctacagatgagggagaggacaagaggaagaaactggagcatgacattgaa
gagggtaacattgccaccgcggccgctgctgccctggcatctgctgccaccaaggccaag
cacttggcagcagtggaggagaggaagatcaagtccctggtggctctgctggtggagacc
cagatgaagaagctggagatcaagctgaggcacttcgaggagctcgagaccatcatggac
cgagagaaagaggctttggagcttcagcggcagcagctgctcaccgagcgtcaggcgttc
cacatggagcagctcaaatacgccgagatgaaggcgaggcagcagatggaacagcaagcc
gccgcagtggcggccgccgccgcccaagctcaaggacaggctcctggatctggaccccac
tctgggccccctccaccaggcatgcaccctggagggccccagccacaccatggagcacca
gtgccccaccacggagggcccccaccgggtggtgccatgcatcccagctaccctccgatg
ggtcaccaccccatggcccctcaccacccaggacagacaggaccaatgggtccaggccag
ccgattccaggacgtatgatgcctggcccgccctctgctggcccccctcctggcggcatg
cctcctatgatgcccccacgccatcctggagctcccaatggcatgtatcctggcccacta
cctgcacaacctgaagcggtacctccagcagctgtgggtcctccagcgcccccaagtgct
cgagtggctgacaactaa
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integrated database retrieval system
