Siniperca chuatsi (mandarin fish): 122882844
Help
Entry
122882844 CDS
T08948
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122882844 (col2a1a)
04518 Integrin signaling
122882844 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122882844 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122882844 (col2a1a)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122882844 (col2a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
122882844
NCBI-ProteinID:
XP_044066602
LinkDB
All DBs
Position
LG10:22838392..22864593
Genome browser
AA seq
1487 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSVVRCQEEDDQEAGGCIQDGQQYNDKDVWKPEPCRICVC
DSGVVLCDEIICEEIKECANPIIPSGECCPICPADASAPIETIGAKGQKGEPGEIADVVG
PKGPPGPMGPPGEQGPRGEAGAKGDKGNAGPRGRDGEPGTPGNPGPPGPPGPPGLGGNFA
AQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGSPGEAGEPGPAGSMG
PRGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKG
ENGAAGAKGESGSAGENGAPGPMGPRGLPGERGRPGAAGAAGARGNDGLPGPAGPPGPVG
PAGAPGFPGSPGSKGEAGPTGARGAEGQQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKG
SAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGLPGFKGEAGPKGELGPAGPQG
APGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGVPGAAG
PKGATGDPGRTGEAGLPGARGLTGRPGDAGPQGKVGPSGASGEDGRPGPPGPQGARGQPG
VMGFPGPKGANGEPGKPGEKGLLGRPGLRGLPGKDGETGAAGPSGPAGPAGERGEQGQPG
PSGFQGLPGPTGAPGEAGKPGDQGVSGEAGAPGAVGPRGERGFPGERGGAGPQGLQGPRG
LPGTPGTDGPKGAIGPAGSAGSQGPPGLQGMPGERGTAGIPGPKGDRGDNGQKGPEGAPG
KDGARGLTGPIGPPGPSGPNGAKGETGPTGPTGASGARGAPGDRGEVGPPGPAGFAGPPG
ADGQPGAKGELGETGQKGEGGSPGPQGPSGAPGPVGPTGVSGPKGARGAQGAPGATGFPG
AAGRVGPPGPNGNPGAAGPAGSAGKDGPKGVRGDAGPPGRQGDAGLRGPAGLKGEKGEPG
EDGPPGADGPSGPQGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGSSGDRGPPG
PVGPPGLTGPAGETGREGTPGSDGPPGRDGAVGVKGERGNTGPAGAPGAPGAPGAPGPVG
PLGKQGDRGESGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQG
LPGPPGPAGDAGASGPAGPSGAKGPAGPAGPAGKDGSNGQPGPIGPPGPRGRSGETGPAG
PPGNAGPPGPPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADEASSSLRQHDVEVDSTLK
SLNNQIENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETG
ETCVYPSIAKVPQKNWWTSKSKDRKHIWFGETMNGGFHFSYAQDGPAANAASVQLTFLRL
LSTEASQNLTYHCKNSVAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDGCKR
HTGQWGKTVLEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4464 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggactcaaggactgttctgctacttgtagcatcccaagttgtttta
ctatccgtggtcagatgtcaggaagaggatgaccaggaggcaggtggctgcatccaggac
ggccagcagtataatgataaggatgtgtggaagcccgagccgtgtcgtatctgtgtttgc
gacagcggagtggttctgtgtgatgagataatctgcgaggagataaaagagtgtgccaac
cctatcatcccatctggagagtgctgtcccatctgccctgctgatgccagtgcccccatt
gagacgattggcgctaagggccagaaaggtgaaccaggagagattgcagatgttgtagga
ccaaaaggaccaccaggccccatgggccccccaggtgagcagggaccacgtggagaagct
ggcgctaagggtgataagggaaatgctggacctcgaggaagagatggtgagcctggcacc
cctggaaaccctggaccccccggcccacctggaccaccagggcttggagggaactttgct
gctcagatggcaggaggtttcgatgagaaggctggaggcgctcagatgggtgtgatgcaa
ggaccaatgggtcctatgggtcctcgtggcccccctggacctagtggagctcctgggcca
caaggtttccaaggttcccctggagaggctggagagcctggtccagctggatcaatggga
cctcgtggaccacctggaccttctggaaaacctggaagtgatggcgaggctggcaaacct
ggaaaagctggtgagcgtggacctgcagggccacagggagctcgtggattccctggaact
cctggacttcctggaatcaaaggacacagaggtcaccctggtctggatggagctaaggga
gaaaatggtgccgcaggagccaagggtgagtctggttctgccggagagaacggtgcccct
ggacccatgggcccacgtggtctgcctggtgagaggggacgtcctggagctgctggagct
gcaggtgcccgtggaaatgatggcttgcccggtcctgctggtccacctgggcctgttggt
cctgctggagctcccggtttcccaggatctccaggatccaagggagaagctggtcctact
ggagcccgtggagctgaaggacaacagggaccccgcggtgaggccggtaccccaggatct
cctggacccgccggcgcatcgggtaaccccggtactgatggtattcctggagctaaagga
tctgctggtgcttctggtattgctggtgctcctggattccccggcccccgtggcccacct
ggaccacagggagctacaggacctctggggccaaagggacagtccggagaccctggtctt
cctggattcaaaggtgaagctggacccaagggagagcttggccccgctggtcctcaaggt
gcccctggccctgctggtgaagaaggaaagagaggtgcgagaggagagcctggagctgct
ggaccactcggacctccaggagagagaggagctcctggtaaccgtggtttcccaggtcag
gatggtcttgctggtgctaagggtgcccctggtgaccgtggtgttcctggtgctgctggg
cctaaaggtgctactggagaccctggacgcacaggagaggctggcctccccggagccaga
ggtcttactggtcgtcccggtgatgctggtcctcaaggcaaagttggaccctctggtgcc
tctggtgaggatggtcgtcccggcccaccaggccctcagggagcccgtggacagccagga
gtgatgggattccctggaccaaagggagccaatggtgaacctggaaaaccaggagagaag
ggtcttctgggtcgccctggtctgagaggtctgcctggaaaagatggtgagactggtgct
gctggaccttcaggccctgctggacctgctggagagagaggagagcaaggacagcctgga
ccttctggcttccagggtctgcctggaccaactggtgccccaggagaggctggaaaaccc
ggagaccagggtgtttctggagaggccggagctcctggtgctgttggacccagaggtgaa
cgtggtttccctggtgagaggggtggtgctggacctcagggtcttcagggacctcgtgga
cttcctggaacacctggaactgatggacccaagggagccattggacctgctggttctgca
ggatcccagggaccccctggcctgcagggtatgcccggagagagaggaactgctggcatt
ccaggacccaagggagacagaggtgataacggacagaaaggacctgagggagctcctgga
aaggatggtgctagaggtttgactggtcccattggtcctcctggcccatctggacccaac
ggagccaagggtgagactggacctactggccctactggtgcttctggtgctcgtggtgct
cctggtgaccgtggtgaggtcggtcctcccgggcctgctggctttgctggacctcctggt
gcagatggtcagcctggtgccaagggagagcttggtgagactggacagaagggagaagga
ggttctcctggacctcagggaccatctggggctcctggacctgtgggacccactggtgta
tctggacctaagggagcacgtggtgctcagggagctcctggtgctactggtttccctggt
gctgctggcagagttggacctcctggccctaatggtaaccccggcgctgctggccctgct
ggttctgctggcaaagacggaccaaagggtgttcgtggtgatgctggccccccaggaaga
cagggagacgctgggcttcgtggacctgctggcctaaaaggagagaagggagagcctgga
gaagatggaccacctggtgctgatgggccttcaggtcctcagggtctggctggatctcgt
ggtattgttggtctgcctggtcagcgtggagagagaggcttccctggtctccctggacct
tctggagaacctggtaaacaaggagcttctggttcttctggcgaccgcggacctcctgga
cctgtgggaccccctggacttactggacctgctggagagactggaagagagggtactcct
ggatcagacggaccccctggtagagacggagctgttggagtcaagggagagcgaggtaac
accggtcctgctggcgcccctggagctcctggtgcccctggtgcccctggacctgtcgga
cccctcggcaagcagggagacagaggagagagtggtgctcaaggacctgcaggaccctct
ggacccgctggcgctagaggaatggctggaccccaaggaccacgtggagataagggagag
gctggtgagactggagagaggggacagaagggtcaccgtggattcactggtctgcagggt
cttcctggacctcctggtcccgctggagatgctggagcctccggacctgcaggaccaagc
ggagctaagggaccagctggaccagctggacctgctggcaaagatggatcaaatggacag
cctggtcccattggaccccccggacctcgtggacgttctggagaaaccggtcctgctggt
cctcctggtaacgctggaccccctggccctcctggtcctcctggccctggcatcgacatg
tctgccttcgccggtctgggccagactgagaagtcccctgatcctctcaggtacatgagg
gctgatgaggcctccagctccctgaggcagcacgacgtggaggttgattccacactcaag
tccctcaacaaccagattgagaacctgcgcagccctgacggctcccagaagaaccctgct
cgcacctgcagagacctgaaactgtgccaccctgagtggaagagcggtgactactgggtt
gatcccaacattggcagcacagccgatgccatcaaggtcttctgtaacatggagactgga
gagacctgcgtctacccaagcatcgccaaggtaccacagaagaactggtggaccagcaag
agcaaggaccgcaaacacatctggttcggcgagaccatgaacggaggattccacttcagc
tacgctcaggacggtcctgctgccaacgctgccagcgtccagctgaccttcttgaggctt
ctgtccactgaagcatcccagaacctcacttaccactgcaagaacagcgttgcctacatg
gaccaggccacaggcaatctgaagaaggctttgctgctgcaaggctccaacgatgtggag
atccgcgcagaaggcaacagtcgcttcacatacagcgtgttggaggatggctgcaagaga
catacaggccagtggggcaagactgtcttggagtacaaaacacagaaaacctcccgtctg
ccaatcgtggacattgctcctatggacatcggaggagcggatcaggagtttggcgtggat
gtaggcgcagtctgcttcttgtaa
DBGET
integrated database retrieval system
