Siniperca chuatsi (mandarin fish): 122884073
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Entry
122884073 CDS
T08948
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 1, mitochondrial isoform X1
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
122884073
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122884073
03016 Transfer RNA biogenesis [BR:
schu03016
]
122884073
Enzymes [BR:
schu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
122884073
Messenger RNA biogenesis [BR:
schu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
122884073
Transfer RNA biogenesis [BR:
schu03016
]
Prokaryotic type
tRNA degradation factors
122884073
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
KH_1
S1
KH_KRR1_2nd
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
122884073
NCBI-ProteinID:
XP_044069354
LinkDB
All DBs
Position
LG11:complement(21662604..21672640)
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AA seq
770 aa
AA seq
DB search
MRYLLQLGHSFARLHVRLCHHSVYSNHANPRRLGVDLGEKKLEISSGRFARFADGSAVVQ
LGETSVMVTAVSKTKPSPSQFMPLVVDYRQKAAAAGRIPTNYLRRELGTTDNEILTSRLI
DRSIRPLFPPGYFYDTQILCNLLAVDGVNDPDVLAINAASAALALSDIPWHGPIGAVRVG
MVDGELLINPTRAEMASSSLNLIVAGAPSSQVMMIEASAENVLQQDFCHAVKVGVKHTQQ
IIHAIQQLAREQKVTKRTPVKVFSAPTDMVEHVRQLASEKIYLVFTDSTHDKISRDEAIN
KVRLETEEDLKEKFPQAEQFEVIESFNTVSKEIFRNLVLNEYKRCDGRELTALRNISCDV
DLFKPLHGSALFQRGQTQVLSSVTFDSLESSIKADIITTALSGIKDKNFMLHYEFPPYAT
NEIGKMGGINRRELGHGALAEKALRPVIPKDFPFTIRVTAEVLESNGSSSMASACGGSLA
LMDAGVPISSAVAGVAIGLISKANPEKPAEIQDYRLLTDILGIEDYLGDMDFKLAGTNKG
ITALQADVKIPGLPLKVVMEAIQQATVAKKEILGIMNKCIAKPRETRKENGPVVENVRVP
VSRRARFVGPGGYNLRRLQAQTGVTISQVDEETFSVFAPTPGAMNEAQDFISDICKDDQE
QQLEFGAIYTATITEIRDIGVMVKLYPNMSAVLLHNSQLDHKRIKHPSALGLEVGQQIQV
KYFGRDPTDGRMRLSRKVLQSPAATVVKTLSEKQSISMGSSNSHTTSTDL
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgaggtatttgctccaactggggcattcgtttgcccgccttcatgtccgtttatgtcac
cacagtgtttacagcaaccatgcaaatccacgaagactgggagtggaccttggggagaag
aaacttgagatctcctcagggaggtttgctagatttgctgatggatctgctgtggtacag
ctgggagagacctctgtgatggtgactgctgtgagcaaaaccaaaccttctccatctcag
ttcatgcctcttgtggttgactacagacagaaagcagctgctgctggtcgaatccccact
aattatttgcggcgagagctgggcaccaccgacaatgagatcctcaccagcagactcata
gacaggtcgattaggccactgttccctcctggttacttttatgatactcagatcctttgt
aacctgctggcagttgatggtgtcaatgatccagatgtgctggctattaatgcagcttct
gctgctctggccctgtctgacatcccctggcatggacccataggtgctgtgcgtgtgggc
atggtagatggcgagttgctgatcaaccccactagggcagagatggcttccagcagtctt
aacctgattgtggctggagcccccagcagtcaagtcatgatgattgaggcgtcagctgag
aacgtgctgcagcaagacttttgtcatgcagtaaaggtgggagtcaaacacacccagcag
atcatacacgccatccagcagctggcgcgagaacagaaggtcaccaagcgcaccccggtc
aaggtcttctcagccccgactgacatggtggaacatgttcgccaattagcttccgagaag
atctatcttgttttcactgattccactcacgataagatttcaagagatgaagctatcaac
aaagttcgactagaaaccgaagaggacctaaaagaaaaattccctcaggctgagcagttt
gaagtcattgaatccttcaacactgtgagcaaagaaatctttcgcaatttagtgcttaat
gagtacaagaggtgtgatgggagggagttgactgctttaaggaacatttcttgtgatgtt
gacctcttcaaaccgctgcatggctcagctttgttccagagaggacaaacacaggtgctg
agcagtgtcacatttgattccctggaatccagtatcaaagcagatattatcaccacagct
ttgagtggcattaaagacaaaaacttcatgcttcactatgaattccctccatatgcaacc
aatgagattggaaagatgggaggcatcaacaggagagagcttggacatggtgccctggct
gagaaagctctgagaccagtcattcctaaagacttccctttcactatcagggtcactgct
gaggtgcttgagtcaaacggatcctcctcaatggcttcagcatgtggaggcagccttgct
ctaatggatgcaggggtgccgatctcttctgctgtggcaggtgtagcaattggcctcatc
tccaaggctaacccagagaaacctgctgagatccaagactacagattactaactgatatt
ctgggaatagaggattaccttggagacatggacttcaaattggcaggaacaaacaagggc
atcactgctttacaggctgacgtgaagatcccaggattgcctctgaaggtggtcatggag
gctatccaacaggccacagtggcaaagaaggaaatcttgggcatcatgaacaaatgtata
gcaaaacccagagagactaggaaggagaatggacctgttgttgaaaatgtccgggtgcca
gtttccagacgagcacgtttcgttggtccagggggctataaccttcgcaggctacaagct
caaacaggtgtgacaataagtcaggtggacgaggaaactttctctgtgttcgctccaacg
ccaggagccatgaacgaagcccaagacttcatcagtgacatctgcaaagatgatcaagaa
cagcagttggagtttggtgccatctacactgccaccatcactgagataagggacattggt
gtgatggtgaaactttatcccaacatgagtgctgtcctgctgcacaactcacaactggac
cacaaacggatcaaacatccaagtgctttgggtttagaagtgggacagcagatacaggtc
aagtactttggacgggacccaacagacggcagaatgagactttcacggaaggtgcttcaa
tctcctgctgcaactgtcgtcaagacattaagtgagaaacagagcatctccatgggttca
agcaacagccacacaaccagcaccgatttgtga
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