Siniperca chuatsi (mandarin fish): 122884388
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Entry
122884388 CDS
T08948
Symbol
kcnma1a
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1a isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
122884388 (kcnma1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
schu04040
]
122884388 (kcnma1a)
Ion channels [BR:
schu04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
122884388 (kcnma1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
122884388
NCBI-ProteinID:
XP_044070167
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All DBs
Position
LG11:16579066..16721674
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AA seq
1423 aa
AA seq
DB search
MLAEADGTVPHGSDSSMRTSNINNNINPDSSILISKMEDVVIPFSSEVPCDNNGQRMWWA
FLASSMVTFFGGLFIILLWRTLKYMWTVCCHCNIKTKEAQKVNNPANNQAADRPKGADEK
EEVPASEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALGIYFIDSSDPIESCQN
FYKDFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFVSVYLNRSW
LGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHLVENSGDPW
ENFQNSQSLSYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMFASYVPEII
ELIGNRKKYGGSYSAVNGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEIVFLHNISP
NLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMR
VISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKAGFIAQSCLAQGL
STMLANLFSMRSFIEIEEDTWQKYYLEGVANEMYTEYLSSAFVGLSFPTVCELCYVKLKL
LLIAIEYKSEQRESRSRKRILINPGNHVKMQEGTLGFFIASDAKEVKRAFFYCKACHDDI
TDPKRIKKCGCKRLIYSKMSVYKRMKLACCFDCGHSEQDCSCMSGSVHSNMDTLQRAYPL
SSVSVHDCATTLRASKYKYNGYVRSPADGATTPGNSGSQKEAGVRFKADCNLVMDEVRPF
RNRSVKTTGCISTSITSNAFPPNNLHPNQDPVVNPGTINIPLVNNRKGSLLPMGLGPGPD
PSKLRLSISGPGDVMGRSLAESRLNRARSLPVKYRYHPSNAMLLSHSRHFEDEHPSTLSP
KKKQRNGGMRNSPNCSPKMMSRHDPLLIPGNEQIESMDMNVKRYDSTGMFHWCPSKDIEK
VILTRSEASMTVLSGHVVVCIFGDVTSALVGLRNLVMPLRASNFHFHELKPIVFVGSLDY
LRREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNNIEDASLQDKECIL
ASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDSSPVHGFVRQASVTTGSNIPIITEL
VNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVT
GGATPELEGLLAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCK
ALKTYNMLCFGIYRLRDAHLNAPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQS
RTSLSHSSHSSHSSSKKSSSVHSIPPSNRQNRSSKTREARDKQNATRMNRMGQEKKWFTD
ESENAYPRNIQIKPMSTHMANQVNQYKSTSSLIPPIREVEDEC
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atgctagctgaggcagatggcaccgttccccatggaagcgacagctctatgaggacaagc
aatatcaataataatataaatccggactcttcaatcttaatatccaagatggaagacgtt
gtcatcccgttctcgtctgaggtgccctgcgacaataatggacagcgcatgtggtgggca
ttcctcgcctcctccatggtgacgttttttgggggtctcttcatcatcctgctgtggagg
accctcaaatatatgtggactgtttgctgccattgcaacatcaaaaccaaggaggctcag
aaggtgaacaaccctgccaacaatcaggcagcagacagaccaaagggtgctgatgagaag
gaggaagtcccagccagcgaggtgggatggatgacttcagtcaaagactgggccggtgtc
atgatctctgctcagacactcactggcagagttctggtggtgttagtctttgcgctcagc
atcggggcccttggaatatactttatagactcctcagatcctatagaatcctgccagaac
ttctacaaagacttcacgttacagatcgatatggccttcaatgtcttcttccttctttac
tttggcctgcggtttatagcagccaatgataagctgtggttctggctggaggtcaactca
gtggtcgacttcttcactgttcctcctgtgtttgtctctgtctacttaaacagaagctgg
cttggtttaagattcctgagagcactaagattgatacagttctcggaaatcttacagttc
ttgaatatcttgaaaacaagcaattccatcaagctggtgaacctgtgttccatcttcata
agcacatggctcacagctgctgggttcatacatttggtggaaaactcaggggatccttgg
gaaaacttccagaattcccagtcactttcctattgggaatgcgtctacttgctgatggtg
acgatgtctacagtgggctacggggatgtctatgcaaaaaccaccttggggcgcctgttt
atggtcttcttcatccttggtggtttggccatgtttgccagctacgtccctgaaatcata
gagttaataggaaaccgcaagaaatatggtggttcctatagtgcggttaatgggagaaag
catattgtggtctgtggtcatattaccctcgaaagtgtctccaacttcctcaaagacttc
ctacacaaggacagggatgatgtcaatgtagaaattgtttttctccataatatttcccct
aatcttgagctggaagccttgttcaaacgtcactttacccaagtagagttctaccaggga
tctgttctcaaccctcacgatctggccagagtgaagatcgagtcagcagatgcctgctta
atcctagccaacaaatattgtgcagatccagatgctgaagatgcctcgaacatcatgagg
gttatttcgatcaagaactaccatcctaagatcagaataatcacacagatgttacaatat
cacaacaaggcccatctgctgaacattccaagctggaactggaaggagggtgacgatgct
atctgcttggcggagctgaaggcaggcttcatagcccagagctgtctggcccagggcctg
tccaccatgctagccaacctcttctccatgagatccttcattgagattgaggaagacaca
tggcagaagtattacctagaaggagtggctaatgagatgtacacagagtacttgtccagt
gcctttgtgggcctctccttccccactgtctgtgagctgtgttatgtgaagctgaagctg
ttgcttattgccatcgaatacaagtctgagcagagagagagcagaagccgaaagcgcatc
ctcatcaacccgggcaaccatgtcaagatgcaggagggaacactgggattctttattgcc
agtgatgccaaagaagtaaagagagcatttttctactgcaaagcttgtcatgacgacatc
acagaccctaagcggatcaagaagtgtggctgcaaacgactgatttattccaagatgtcc
gtctacaaacgaatgaaactggcatgttgttttgattgcggccattcagagcaagactgc
tcttgcatgtcaggcagtgtacatagtaacatggacacccttcagagggcctacccactt
tcctctgtctctgttcatgattgcgcaaccactttacgtgcctccaaatataagtataat
ggatatgtcagatcaccagcagatggcgctacaacaccagggaacagtggaagtcaaaaa
gaggctggcgttcgattcaaagctgattgcaatttagtaatggatgaagttagacctttt
cgaaaccgatcagttaaaaccaccggctgcatctccacctccatcacctcaaatgcgttc
cctcccaacaacctgcaccccaaccaggaccccgtggtcaacccgggcacaatcaacatc
cccctcgttaataaccgtaaaggaagtctgctccccatggggctggggcctgggcctgac
ccctcgaaactgcgcctcagtatctcaggtccaggagacgtgatgggcagatccctggct
gagagtcggctgaaccgggcccgcagtctgccggtgaaataccgctaccaccccagtaat
gccatgctgctcagtcacagtaggcacttcgaagacgagcatccatcaactctctcgccc
aaaaaaaagcagcgcaacggagggatgcgaaactcacccaactgctcacccaaaatgatg
agtcgacacgatccccttctaattcctggaaatgagcaaatcgagagcatggacatgaac
gtgaagaggtatgactcgacagggatgtttcactggtgcccatcaaaggacatcgaaaaa
gtcatcctgacccggagtgaagcctccatgacagtactgagcggccatgtggtggtctgt
atatttggggatgtcacgtccgctttagtggggctgcgaaacttggtgatgcctttaaga
gccagcaacttccatttccacgagctaaagcctattgtttttgtgggctcgctggattac
ctgcggagagagtgggagactttacacaacttccccaaggtctcgatcttacctggtaca
ccattaagtcgggcagatttaagggctgtcaacatcaacctctgcgacatgtgcgtaata
ctgtcagccaatcagaacaatatcgaagatgcctcactgcaggataaggaatgcatcttg
gcatcactcaacatcaaatctatgcagtttgatgacagcatcggggtcttacaggctaat
tcccaaggtttcacgcctcctggaatggacaggtcatctccagacagcagtccagtacat
ggctttgtgcgtcaggcttctgtcaccaccggatccaacatccccatcatcacagaactg
gtgaacgactcaaacgttcagttcctggaccaagatgatgatgacgacccagacacagag
ctgtacctcactcagcccttcgcctgcggcaccgccttcgctgtcagtgtactcgactcc
ctgatgagcgcgacatatttcaatgataacatcctcacgcttattcggacgctggtcaca
gggggagccacaccagagctggagggcctgttggctgaggagaatgctctcagaggaggc
tacagcacaccacagacactggccaacagagacaggtgtcgcgtcgcccagctagccctc
tacgatggcccatttgccgacttgggggatggcggctgctacggggatttattctgtaaa
gcattgaagacgtacaacatgctgtgttttggaatctacagattaagagacgctcatctc
aatgcaccgagccagtgtacaaaacggtatgtgatcacgaacccaccatatgagtttgag
ctcgtgcccacagacctgatcttctgcctcatgcagtttgaccacaacgcaggccagtcc
cggacaagcttgtcccactcttcccactcctcccattcctccagcaaaaagagctcctcc
gtccactccatcccaccctccaaccggcagaaccgcagcagtaagacccgggaggcccgc
gacaaacagaatgcaacaaggatgaatagaatgggccaagaaaagaaatggtttacagat
gaatcagaaaatgcctacccacggaacattcagatcaagcccatgagcactcacatggcc
aaccaagtcaaccaatacaaatccactagtagtctgattccaccaatcagagaagttgaa
gatgaatgctga
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integrated database retrieval system
