Siniperca chuatsi (mandarin fish): 122884958
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Entry
122884958 CDS
T08948
Symbol
smarcd1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122884958 (smarcd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122884958 (smarcd1)
03036 Chromosome and associated proteins [BR:
schu03036
]
122884958 (smarcd1)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122884958 (smarcd1)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122884958 (smarcd1)
PBAF complex
122884958 (smarcd1)
GBAF(ncBAF) complex
122884958 (smarcd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
122884958
NCBI-ProteinID:
XP_044071446
LinkDB
All DBs
Position
LG2:complement(10725390..10742781)
Genome browser
AA seq
514 aa
AA seq
DB search
MAARGGFQTAPTGGGGGAMGPGPPVPGAGPGMGPVTPSGRMVPSSAAQNHMYRSPMPGPG
YPRPGMPPSSRMTPQGPAMGPPGYGNSPVSRPVMPGVMDPSRKRPAPQQIQQVQQQNRNQ
HTKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRK
LRIFISNTFNPAKPDAEDGEGTVASWELRVEGRLLEDTAVSKYEATKQKRKFSSFFKSLV
IELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVGVRCTVLLMLDYQPPQFKLDPRL
ARMLGIHTQTRPVIIQALWQYVKTHKLQDPHEREFINCDKYLQQIFETQRMKFSEIPQRL
HALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAGLD
NKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEF
YYQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggcggctagaggggggtttcagacggcaccgactggaggtggtggtggcgcaatggga
cctggaccaccggtaccgggcgcaggaccaggcatgggccccgtgactccttctggaagg
atggtaccgtcttcggccgcgcagaaccacatgtaccgctccccgatgcccgggcctggg
tacccgagaccgggcatgcctccatctagccgtatgacaccgcagggaccagccatgggc
cccccaggatacggcaacagcccagtgtctcgccctgtgatgcctggcgtgatggacccg
tctcgcaagaggcccgccccccaacagattcagcaggtgcagcagcagaaccgcaaccag
catacaaagaagaagaagatggctgataaaattctacctcagagaatcagggaactggtc
ccagagtctcaggcttacatggatctgctggcttttgagaggaagctagaccagaccatc
atgcgcaagaggctggacattcaggaggccctcaagaggcccattaagcaaaagagaaag
cttcggatctttatatccaacaccttcaaccccgccaagccagatgctgaggatggagaa
ggcacagttgcatcatgggagctacgtgttgaggggcgtctgctggaagatacagccgtg
tccaagtatgaagccaccaaacagaagcggaagttttcctctttcttcaagtctctggtg
attgagttggacaaggacctgtatggtccagataatcaccttgtggaatggcacaggact
gccaccacccaggagactgatggtttccaggtgaagaggcctggtgacgtgggtgttcgc
tgcaccgtcctgctcatgcttgactaccagcctcctcagttcaagctggacccccggctg
gctcgtatgctgggtatccacacccagaccagacctgtcatcattcaggccctgtggcag
tacgtcaagacccacaaactccaagaccctcatgaacgcgagttcatcaactgtgacaaa
tacctgcagcagatctttgagactcagcgaatgaagttctctgagatcccgcagcgcctg
cacgcactcctgatgcccccagagcccatcatcatcaaccatgtgatcagtgtggaccct
aatgaccaaaagaagacagcttgctatgacattgacgtggaggtggacgacacactgaag
acccagatgaactccttcctgctctccacagccagtcagcaggaaatagcaggactggac
aataagatccatgaaaccattgagaccattaaccagctgaagacccagagagagttcatg
ttgagttttgccagagatcctcagggctttatcaacgactggctgcagtcccagtgcaga
gacctcaagaccatgacagatgtggtaggaaacccagaagaagagcgaagagcagagttt
tactaccagccctgggctcaggaggcagtctgtcgctacttctactccaaggtccagcag
agacggcaggagctggagcaggcgctcggcatcaggaacacctaa
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