Siniperca chuatsi (mandarin fish): 122885207
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Entry
122885207 CDS
T08948
Symbol
prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122885207 (prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
schu03041
]
122885207 (prpf40a)
Spliceosome [BR:
schu03041
]
Complex A
U1 snRNP components
U1 related factors
122885207 (prpf40a)
Complex B
122885207 (prpf40a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Motif
Other DBs
NCBI-GeneID:
122885207
NCBI-ProteinID:
XP_044071916
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All DBs
Position
LG12:complement(13114893..13129665)
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AA seq
879 aa
AA seq
DB search
MSSSEANNGPNQAPPYPGVPPSGIPPPFMGPPGIPPHFPPIGMPPMGQRPPSMTPMPPGI
IPPGIMPPMGAPPMGQMPGMMPPMMPGMMMPPRMPAASVQPTAPPGVDSTAVAPGTASTT
NGSPQDEQPKKKSLWTEHKSLDGKTYYYNTETKQSTWEKPDELKSPVEQMLSKCPWKEYK
SDTGKPYYYNSQTKESRWTKPKELEDLEAMIKAEENGTAETVAPGTAAAPAVQADNTAAT
MATVMEAETATSVSEEHLSQAVHNTAEVKTADAPVASSESSAATEAIASIEVTKEERPEL
QKKTYKWNTKEEAKQAFKELLKEKGVSSNSSWEQAMKMIINDPRYSALPKLSEKKQAFNA
YKVQTEKEEKEEARIKYKESKETFQRFLENHEKMTSTTRYKKAEQMFGELEVWSCVPERD
RLEIYEDVLFYLAKKEKEQAKQLRKRNWEALKNILDNMANVTYRTTWSEAQQYLLDNPTF
AEDEELQNMDKEDALICFEEHIRALEKEEEEEKQKTLLRERRRQRKNREAFQKFLDELHD
HGQLHSMSAWMEMYPTLSSDIRFANMLGQPGSTPLDLFKFYVEDLKARYHDEKRIIKDIL
KDKGFLVEVNTSFDDFGSVISSDKRATTLDAGNIKLAFNSLLEKAEAREREREKEEARKM
KRKEAAFKNMLKQATPPLEPETTWEGIRERFLKESAFEDVTLESERKRIFKDFMHVLEHE
CQHHHSKTKKHSKKSKKHHRKRSRSRSGSESEDEEYHKKKKRSQSKSPSERSSSAESERS
YKKSKKHKKKGKKRRHKSASPESDNEKKGRERDGKREKDLEKDKENDKSRGKSRSDSKQK
SPKRKVAKEEGGWDTSGSELSEGELEKRRRTLLEQLDAP
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatcggaggctaataatggcccgaaccaagcgccaccttatccaggtgtaccg
ccctcagggatacctcccccatttatgggaccaccaggaataccgcctcatttccctccc
atcggaatgcccccaatgggacagcgaccgcccagcatgactcctatgcctcctggtata
attcctcctggtataatgccaccaatgggggcaccgccaatgggacagatgccaggcatg
atgccacctatgatgccagggatgatgatgccccctcgcatgccagctgcgtctgtacaa
ccaacggcgccgcctggtgttgactccacagctgttgcacccggaacagctagtaccaca
aatggatctccacaggatgaacagccaaagaagaagtccctgtggacagaacacaaatca
ctggatgggaagacctattactacaatacagagaccaagcagtccacatgggagaaaccg
gatgaactcaaatctcctgtagagcaaatgctgtctaaatgcccttggaaggagtacaag
tcagacacagggaagccttattattacaactctcagacgaaggagtccagatggaccaaa
cccaaagagctggaggatcttgaagctatgatcaaagcagaggagaatggaacggcagag
acagtggctcccggcaccgcagcagctcctgcagtgcaagcagataatacagccgccact
atggcaaccgtaatggaggcggaaactgcaacatcagtctcagaggaacacctgtctcag
gcagtgcataacacagctgaggtcaagactgcagatgcacctgtggcttcgtcagagagc
tcagccgctacggaggccatagccagtattgaagtcacaaaggaagagcggccagaactt
cagaagaaaacatataaatggaacacgaaagaggaggccaaacaggccttcaaagagctg
ctgaaagagaagggtgtgtcctcaaactcctcatgggaacaggctatgaaaatgattatc
aatgatcctcgctacagcgcgcttcccaaattgagtgagaagaaacaggcgtttaatgcc
tacaaagtccaaacagagaaggaagaaaaagaggaggccagaattaaatacaaggagtcc
aaagagacctttcagaggttcttggagaaccacgagaagatgacatctaccaccagatac
aagaaagcggaacagatgtttggtgagctcgaggtgtggagctgtgtaccagagagagac
aggctggagatttatgaagatgtattgttctaccttgctaagaaagagaaggagcaagcc
aagcagctaagaaagagaaactgggaagctctgaagaacattttggacaacatggccaac
gtcacataccgtaccacctggtctgaggctcagcagtacctgctagacaaccctaccttt
gcagaagatgaggagctccagaatatggacaaagaggatgccctcatttgttttgaggag
cacatcagggcgctagagaaggaggaggaggaagagaagcagaagactcttctcagggag
aggagacggcaacgcaagaacagagaggccttccagaaattcctggatgagctccacgac
cacggtcagcttcattctatgtctgcctggatggagatgtacccgaccctgagctcagac
atccgcttcgccaacatgctgggccagccgggttccactcccctggatctgttcaaattc
tatgtggaagacttgaaggctcgctaccatgatgaaaagaggatcatcaaagatattctt
aaggacaaaggctttctggtcgaagtcaacactagctttgatgactttggatcagtaatc
agctcagacaagagagccaccacactggatgcaggaaacataaagctggccttcaacagt
ttactggagaaggcagaagccagagagagagagcgagagaaggaggaggccaggaagatg
aaaaggaaagaagcagcctttaaaaacatgctgaagcaggccacaccgccactggagcca
gagactacatgggaggggatcagagagagatttttaaaagagtctgcatttgaagacgtg
actctggagtcagagaggaaaaggatattcaaggacttcatgcatgtcttggagcatgaa
tgccaacatcaccactccaagacaaagaagcactcgaagaagtccaagaaacaccacagg
aaacgatcccgttctcgatctggctcagagtctgaggacgaggaataccacaagaagaaa
aagaggtcgcagtccaaatcgccttctgaacgctcgtctagcgcagaatctgagagaagc
tataaaaaatccaagaagcacaagaagaagggcaagaagagacgtcacaagtctgcatca
ccagagtctgacaatgagaagaaaggaagagagcgtgatggaaagcgtgaaaaggaccta
gagaaagataaagagaatgacaagtctcggggaaaatctcgctcggactctaaacagaag
tctcctaaaagaaaagtggcaaaagaggagggcggctgggatacgtcaggcagtgagctg
agtgaaggagagctggagaaaaggagaagaactttactggaacagctggatgcaccttga
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