Siniperca chuatsi (mandarin fish): 122885335
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Entry
122885335 CDS
T08948
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122885335 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122885335 (ddx3xa)
03041 Spliceosome [BR:
schu03041
]
122885335 (ddx3xa)
03036 Chromosome and associated proteins [BR:
schu03036
]
122885335 (ddx3xa)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122885335 (ddx3xa)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
122885335 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
122885335 (ddx3xa)
Spliceosome [BR:
schu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
122885335 (ddx3xa)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
122885335 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122885335
NCBI-ProteinID:
XP_044072218
LinkDB
All DBs
Position
LG12:complement(27155403..27173079)
Genome browser
AA seq
738 aa
AA seq
DB search
MSHVVVDNPHGLEQQLAVLDLNSADGQGGGTGRRYIPPHLRNKDAPKNAGNAYSAGRQCG
YSVAPVNLYSPGWDGGRSNGFVNGYHDNRTNGGFGGRGPPRNDRGGRGAYRGNRGGGSFN
QPLQNAGFGSHDNKDGNWGGTPRDAAYNSFGGRSDRPKTGFFNDRGAGSRGRYERGGFAG
GGNSRWAEDSREEDWSKPTAPNERLEHELFSGGNTGINFEKYDDIPVEATGSNCPPHIES
FHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLLPVLSQ
IFTEGPGEAVQAGKNNGQDNGRYGRRKQYPISLVLAPTRELALQIYEEARKVAYRSRVRP
CVVYGGADIGQQIRELERGCHLLVATPGRLVDMMERGKIGLDYCNYMVLDEADRMLDMGF
EPQIRRIVEQDTMPPKGIRQTMMFSATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQ
KVVWVEENDKRSFLLDLLNATVIPSEVQENVTEAPEKPGKESLTLVFVETKKGADALEDF
LYHEGYACTSIHGDRSQRDREEALNQFRSGRCPILVATAVAARGLDISNVKHVINFDLPS
DIEEYVHRIGRTGRVGNLGLATSFFNDKNSNITKDLLDILVEAKQEVPSWLESLAYEHQH
KSTTRGRSKRFSGGFGARDYRQTPGGAGNFSSSRGGRNTGGHGGSRGFGGGGFGGNFYNN
DGYGGNYSHSGSVDWWGN
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgttgataatccacacggtctagagcagcagcttgctgtcctagac
ttgaactctgctgacggacaaggcggaggaactggcaggcgttacattccacctcacttg
agaaacaaagacgctcctaaaaatgcaggaaatgcttattccgctggtagacagtgcggt
tattcagtggcaccagtaaacctctattcacctggatgggacggtggacgcagcaatgga
tttgtgaatggttaccatgacaaccgcacaaatgggggctttggagggcgaggaccccct
cgcaatgatagaggtgggcgtggcgcctaccgtggtaacaggggtggaggctcgtttaat
caaccattacaaaatgcagggtttggcagtcacgacaacaaagatggtaactggggagga
acgccaagggacgctgcctacaacagctttgggggacgttctgataggcccaagacaggc
ttcttcaatgaccgtggggcaggttcaaggggaagatatgagcgtgggggttttgctggt
ggaggaaacagccgctgggcggaggactccagagaagaagattggtccaagcccactgct
cccaacgagcgcctggaacatgagcttttctctggaggcaacactgggataaatttcgag
aaatatgatgatattcctgtggaggccactggaagtaactgcccaccccacattgaaagt
ttccatgatgtggacatgggtgagatcatcatggggaacatcaccctgagtcgctacact
cgtcccaccccggtccagaagtatgcaatccccatcatcaagtccaagagagacctgatg
gcttgcgcccagactggctccggtaagactgctgctttcttgctgccagtgctgagtcag
atcttcacagaagggccaggagaggctgtgcaggccggcaaaaacaatggacaggacaat
ggaaggtatggccgccgtaagcagtacccaatctcacttgtcctggctcccaccagagaa
ctggctttgcagatctatgaagaagccaggaaggttgcctatcgctcacgcgtgcgtccc
tgcgtggtgtacggcggcgctgatattggccagcagatcagggaactggagagaggctgt
cacttgctggtggccacacctggacgtctggttgacatgatggagaggggcaaaatcggc
ctggactactgcaactacatggtcctggatgaggctgaccgcatgttggacatgggtttt
gagccacagatcagacgaattgtggagcaagatacaatgccacctaaaggcatccgccag
accatgatgttcagtgccaccttccccaaggagatccagattcttgctcgtgacttccta
gaagactacattttcctggcagtgggacgtgttggttccacttcagaaaacatcacccag
aaggtggtctgggtagaggagaacgacaagaggtccttcctccttgacctgcttaatgcc
acagttattcccagtgaggttcaggaaaatgtgacagaggcaccagagaaacctggcaaa
gaatcgttgactctggtgtttgtggaaacaaagaaaggagcagacgctttggaggacttc
ctttaccacgagggttatgcctgcaccagcatccatggagaccgatcccagagagacaga
gaggaagctctgaatcagttccggtctggacgctgccccatcttggtggctacagctgtg
gctgcgagaggtctggacatcagcaacgtgaagcacgtcattaactttgatttgcccagt
gacattgaggaatacgttcaccgtattggccgtacgggacgtgtgggcaacctcggtctg
gccacgtcgttctttaacgacaaaaacagcaacataaccaaagacttgctggacattttg
gtggaggccaagcaggaggttccctcctggcttgagagcctggcctacgagcaccagcac
aagagcacgacccgaggacgctctaagaggttctctggtggtttcggagctagagactac
cgtcagacgccaggtggcgcaggaaacttcagcagcagccgtggagggcgtaacactgga
ggccatggaggaagccgcggctttggtggaggtggcttcggtggcaacttctacaacaat
gacggctacggaggaaactacagccactctggtagtgtggattggtggggcaactag
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