Siniperca chuatsi (mandarin fish): 122885353
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Entry
122885353 CDS
T08948
Symbol
ift88
Name
(RefSeq) intraflagellar transport protein 88 homolog isoform X1
KO
K16474
intraflagellar transport protein 88
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
schu03037
]
122885353 (ift88)
Cilium and associated proteins [BR:
schu03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex B1
122885353 (ift88)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_1
TPR_12
TPR_8
TPR_19
TPR_7
TPR_6
TPR_14
TPR_16
TPR_11
TPR_9
ANAPC3
TPR_17
SNAP
ARM_TT21_5th
TPR_CcmH_CycH
TPR_10
TPR-S
ARM_TT21_4th
DUF2225
MIT
ARM_TT21_C
ARM_TT21
HAT_PRP39_C
Consortin_N
ARM_TT21_2nd
TPR_MalT
RNPP_C
SHPRH_helical-1st
FumaraseC_C
Motif
Other DBs
NCBI-GeneID:
122885353
NCBI-ProteinID:
XP_044072254
LinkDB
All DBs
Position
LG12:23670541..23695073
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AA seq
869 aa
AA seq
DB search
MENVHLAAEEDDIYSGYNDYNPTFDFEELENDVGFQQAVRTSHGRRPPMTAKFPGTAIGA
RPLASSFGSRIPMASSMGRPMTGALQDGAARPMTAVRAAGYTSSLTRGSNFDPLGQSRGP
APPLEGKNEDTPEEKIKILEKKVNDLIEESCMAQSIGALQLALEKAKEAGRKERALVRQR
EQSGNAEHINLDLTYSVLLNLANQYANNEMYPEALNSYQVIVKNKMFSNAGRLKVNMANI
YVKQKNYPKAIKFYRMALDQISNAHKEMRIKIMQNIGVVFVRMGQYSDAITSFEHIMSES
PNIKTGFNLILCYYAIGDRERMKKAFQKLISVPLGIDDEDKYIPSNDDTSSNMVIEAIKN
DKLHQMERDLKILAEKFIMTAAKLIAPAIETSFATGFDWCVDMVKSSQYVELANDLEINK
AITYLRQKDFNQVEAVETLKTFEKKDSRVKSAAATNLSFLYFLEKDYDQADRYADLAMNA
DRYNPAALINKGNTVFVKQDYEKAAEFYKEALRNDSSCTEALYNLGLTYKRLNRLEEALD
CFLKLHAILRNSAQVMYQLANLYELLEDPQQAIEWLMQVISVTPTDPRALAKLGELHDGE
GDKSQAFQHYYESYRYFPSNIDVIEWLGAYYIETQFCEKAIQYFERATLIQPTQVKWQLM
VASCYRRSGNYQKALETYKDIHRKFPENVECLRFLVRLCTDMGLKEVQEYATKLKKVEKM
KEIREQRVKSGREGSARGRREGREGRESSAGSAAGISPPVLTSPKKASIMEKDVKAVSQS
ESKQLSPLLDSGRDSGHSSNSTKGERLSAKMRSLPASNEPYEASSPKEIDASYVDPLGPQ
MERPKTGAKRRVEDDDFADEELGDDLLPE
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacgtgcatctggctgcggaggaggatgatatttattcgggttacaacgactat
aatccaacatttgacttcgaggagttggagaatgatgtgggcttccagcaagcagtgagg
acaagtcatggaagaagacctccgatgactgccaaatttcctggcactgccattggagct
cggcctttagcttcttcctttggatctcgcatacctatggcctcttcaatgggcagaccc
atgactggagctctgcaggatggagcagcccgaccaatgactgctgtcagagcagcaggt
tacacctcctccctgactcgtggctcaaattttgaccctctgggccagtccagaggcccc
gcacctccacttgaaggaaagaatgaggacacgcctgaggagaaaatcaagatcctggag
aagaaagtgaatgacctcatagaagagagctgcatggcacagagcattggagctttacaa
ctggctctcgaaaaagccaaagaggcagggaggaaggagagagcactggtgagacagagg
gaacagtctggcaatgcagaacacatcaatttagacctcacctactctgttttgctcaac
cttgccaaccagtatgctaacaatgaaatgtacccagaggccctaaacagctaccaggtc
attgtgaagaacaagatgttcagtaatgcaggccgtctgaaagtcaacatggccaatatc
tacgtcaaacagaagaactaccccaaagccatcaagttctaccgaatggcactggatcag
atctccaacgctcacaaggaaatgaggatcaagatcatgcagaatatcggcgtggtcttt
gtccgcatgggccaatactcagacgccataacatctttcgagcacatcatgagtgagagc
cccaacatcaagacaggcttcaacctcatcctgtgctactatgccatcggcgatagggag
aggatgaagaaggcctttcagaagctcatctctgttcctctgggcatcgatgatgaagac
aagtacatcccatctaatgatgacaccagctcaaatatggtcatcgaggccatcaagaat
gacaaacttcaccagatggagagagatctaaaaatcctggctgagaagttcatcatgacc
gcagccaagctcatcgctcctgccattgagacttcttttgctactggatttgactggtgt
gtggacatggtgaagagttctcagtatgttgagcttgccaacgatctagagataaacaaa
gccatcacctacctcagacagaaggacttcaaccaggttgaggcggtggaaactctgaag
acatttgagaagaaggacagcagagtgaagagtgctgcagccaccaacctctcttttctc
tatttcctggagaaggactatgaccaggctgaccgatatgctgacctcgccatgaacgct
gatcgctacaatccagcagcacttatcaacaaaggcaacacggtgtttgtcaagcaagac
tatgaaaaggctgcagagttctacaaagaagcactgaggaatgattcctcctgcactgag
gccctctacaacctgggtctaacctataagagactgaatcgtctggaggaggctctggac
tgcttcctgaagctccatgccattctgaggaacagtgcccaagtcatgtaccagctggcc
aacctctatgagcttctggaagatccccagcaggcaatcgagtggctgatgcaggtcatc
agtgtaactcccaccgacccccgggcactggccaaactgggagagctgcatgacggcgag
ggcgacaagtcacaggctttccagcactactacgagtcctacaggtacttcccctccaac
atcgatgtgattgagtggctcggggcttactacatcgagacacagttctgtgagaaggct
attcagtactttgaaagagccacactcatacaaccaacccaggtgaagtggcagctaatg
gtagcaagctgctacagaagaagtggaaactaccagaaagctctggaaacgtataaagac
attcaccgcaagtttccagaaaatgtggaatgcctgcgtttcttggtgaggctgtgcaca
gacatgggattgaaggaagtccaagaatatgccaccaagttgaaaaaggtggagaagatg
aaggagatcagagaacagagggttaagtcagggcgtgagggcagtgccagaggtcggaga
gaagggagagaagggagagagagcagcgccgggagtgctgcaggcatctccccacctgtc
ctcacctctcctaagaaggccagcattatggagaaggatgttaaagcagtatctcaatct
gagtctaaacaactcagtccactgttggactcagggagagacagcggccacagcagcaac
agcactaaaggagagcggctgagcgccaagatgaggtcacttcctgcttccaatgaaccc
tatgaggccagcagcccaaaagaaatagatgcgtcctatgtggacccactggggcctcag
atggagcgaccaaagacgggagccaagagacgcgtggaggatgatgactttgcagatgaa
gagctgggagacgacctgctgccggagtag
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