Siniperca chuatsi (mandarin fish): 122885421
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Entry
122885421 CDS
T08948
Symbol
lmo7a
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
122885421 (lmo7a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
schu04121
]
122885421 (lmo7a)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
122885421 (lmo7a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
PDZ_6
PDZ
PDZ_2
Motif
Other DBs
NCBI-GeneID:
122885421
NCBI-ProteinID:
XP_044072409
LinkDB
All DBs
Position
LG12:complement(20043747..20092850)
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AA seq
1443 aa
AA seq
DB search
MEWREQSAVSCDEAYLEAQRWIEAVTKKKFGSNDFRSALENGVLLCDLINKIKPSIIKRV
NRLPTPIAGLDNLNVFLKACGKLGLKEAQLFHSGDLQDLSTRVTVKHQETNRRLKNVLIT
IYWLGRRAQCDRVYDGPYLNFKAFEGLLGTALYKALQESSSQKGNNVRDSGFGDNWYTEQ
EELYQLRGGGEGEHRRDDSLDSLDSLGSRPHSISSDTTLKGSSEGCCSDTEADSVLRMAE
NKDSLSYRRSVSITPKASIQFNQFLPTKDKPSGYVPAPLRKKRAERTEDSRRSWANPTYT
EDEGTLTRQPQMQESIDGSKSTSDIQVDPTIIRQARYEELQKYREQIKNSEDKWQDDLSK
WKSRRRSVNSDIVKKKEEREKIEQITYSSNRISKTFKEMQEERENKVKNSVGGRLGSLSY
LDDGEDVFEKPVIFPRTQTLPTRSYTIDTPYYSFECPLKEDKPPAASPATGRAASPPTSQ
EVDIVDHPAGSDATTAITPTSRRSFHRSQSPAAAPSQRSPVLEHTSTVKTEKTTTIVPSS
SSMQKVPEPRRPLSGTQTEVGAPSSGSLYKQQPQLSSMEPKPPGVSQVSTSLPRSYQRSD
SARLTSVVTPRPFGTQSSRLTSLPRAFTTDDSHKRVNGGVDASKKSSVPSRYHQFMTSED
ETHSQSSSARSSEEEEEEEDETTAKSITSIQSVSPVAPQVKSEAPVIPAPAKETSQENQC
EMRISLNQKPNSSRDFGFQASWDSTGARVTSIQPGSSAEMCQLQAGDEVLTVNGHQVAEM
SYTDWKSCMEESLQEGSLVMDIRRHGKNNWDRDQPSLLFKSHKTINLTSTDHLILLGSPD
TKTVNSNLDITSCISMEMLPSKEAPALPAVDAASNGVNGGFREESVTMRNKESEPISMKN
LKRRSEFFEKGGLESAMPDIPVPSITLSSSRWSWDPEEERRRQEKWQKEQERLLQEKYKR
DQEKLQEEWLKAQQDIAKSVDQQEPEILEVDSHSVSAHSPLSPINQPTSPLWIEEERKKK
EELEHQRQAEERRKREEEERELQRLQEERKRKERQEEEERKKREEEELRWQRRREEEKEE
ERRRQEAAEQQRREREGAFEQQWAGGSHVFTNVQSPLSFTDRMKSKSSPQLDEEEKPQWK
GARVQPGGMAQWLLEEQCRSAHDKEARSQRAASELEIERRNILSAMRYREPERVTDSGVG
EKKGQQTASQAEAERQQILNEMKKKTPLLTDSSWIRQRASNTATTIKETDVPPMRRGESL
DNLDASYNSWRSSWTPRSNSYFQNYTRPHSALSGTTSFYGGRSGAQRPLGSSTLPSSYSM
SSLRGGAGTPPFPWSQQSPSPSPSSPSPTTSPEPTSEAGAPQQRSRSVSGKKICTFCDAP
LGKGAAMIIESLGLCYHLGCFKCIDCKSDLGGSEAGAEVRIRNKQLYCNTCYMRFKTGQP
TTM
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggagtggcgtgagcagtccgctgtcagctgcgacgaagcctatttggaggcgcagagg
tggattgaggcagtaaccaagaaaaaatttgggagcaatgacttccgatcagcgctggag
aatggcgttctgctgtgtgatctgatcaacaagatcaagcctagtattatcaagagggtt
aacaggctgcccacacctattgctggactggacaacctaaacgtcttcctcaaggcctgt
gggaagcttggactaaaggaagcacagctatttcactccggagatcttcaggacttatcc
acaagagttacagtcaagcatcaagagaccaacagaaggctgaaaaatgtattgatcacc
atttactggctgggtagaagagctcagtgtgaccgtgtctatgatggaccttacctgaat
tttaaggcattcgagggattattgggcacagcactatacaaggctctgcaggaatcatcc
agtcagaaaggcaacaacgtcagagacagcggttttggagataactggtacacagagcaa
gaggagctctaccaactgagaggaggaggagaaggcgaacacaggagagacgactccctg
gacagtttggactctttgggctcccgaccccacagcatctcatctgacactactcttaaa
ggcagcagcgagggttgttgcagtgatactgaggcagactctgtcttgaggatggctgag
aacaaggactctctcagttaccgccggtcggttagcatcacacccaaggccagcatccag
tttaatcagttcctgcccactaaagacaaaccctcaggctacgtgcctgctccgttaagg
aagaaacgagctgaacgcactgaggacagtcggcgcagctgggccaaccccacatacaca
gaggatgaaggcacactcactagacagccgcaaatgcaagagagtatcgacgggagtaaa
tcaacaagcgatatccaggtcgaccctaccatcatccggcaggctcgctacgaagagctg
cagaagtatcgtgagcagataaagaacagtgaggataagtggcaggatgacctgagcaaa
tggaagagccggcgcaggagtgtcaactctgatatagtgaagaagaaagaggaaagggag
aagatagagcagatcacgtacagcagcaacagaatctccaagaccttcaaggagatgcaa
gaggagagagaaaataaagtaaagaacagcgttggtggtcgtctcggatctctctcttac
ctggacgacggtgaggacgtatttgagaaacctgtcattttcccacgtacccaaaccctt
cctaccaggagctacactattgacaccccttactattcctttgaatgccctctgaaagag
gacaaaccccccgctgcttccccagctactggcagggctgcttcccctcccacctcacag
gaagttgacattgtggaccatcctgcaggcagcgacgccacaaccgccatcactcccacc
agccgcagatctttccacagatcccagtctccagcagctgcaccttcacagaggagtcca
gtcttagaacacactagcactgtcaagacagagaagaccacaaccattgtcccctcttct
agctccatgcaaaaggtgcccgagccaaggcgcccattgtcgggcacacagactgaggtg
ggggccccctcctctggttctctgtacaaacaacaaccacagctcagctcaatggaaccc
aagcctcccggggtgtctcaggtttccacctccctccccaggagctaccagagatcggat
agcgcacgtctaacctcagttgtcacgccaaggcccttcgggacccagtcgtcccgcctc
acctcacttcccagagcctttacaacggacgactctcacaagcgtgtcaatggcggcgtc
gatgcttctaagaagtcgtctgtgccgagccgctatcaccagtttatgacctctgaggac
gagactcactctcagtccagctcggcccgcagcagtgaagaagaggaggaggaagaagac
gagaccacagcaaagagcatcacttccattcagagtgtttcacctgtcgctcctcaggtc
aagagcgaagccccagtcattcctgccccagccaaagaaaccagccaggagaaccaatgc
gagatgcggatcagcctgaaccagaagcccaacagcagcagagactttggcttccaggcg
tcctgggactcgacaggagctcgcgtcacgtccatccagccaggcagctcggcagagatg
tgccagcttcaggccggagacgaggtgctgacagtgaacgggcaccaggtggcagaaatg
agctacacagactggaagtcctgcatggaggagtctctgcaggagggcagtctggtcatg
gatatacgccgtcatggcaagaacaactgggacagagatcaaccttccctgctatttaaa
agccataagaccatcaatctgaccagtacggatcatctgatacttctaggttcccctgac
acaaagactgtcaactccaacctggatatcacctcatgcatttccatggaaatgctgccg
tccaaagaggcccccgccctcccagccgttgatgcggcttcaaacggagttaatggaggt
tttcgtgaggagtcagtgaccatgaggaacaaagagtcagaacccatatctatgaaaaac
ttaaaacggaggtcagagttttttgaaaaaggaggattggagtctgcaatgccagatata
cctgttccttcaatcactctgtcttccagtcgctggtcttgggacccagaagaggagcgc
agaagacaagaaaaatggcagaaggaacaggagcgcctcctacaggagaaatataaacgt
gaccaggagaaactgcaggaggagtggctaaaggctcagcaggatattgccaagagcgta
gaccaacaagagcctgagatcctggaggtggacagccacagcgtcagcgcacactctccc
ctctctcccatcaaccagcccacctctcctctgtggatagaggaagagagaaagaagaag
gaggagctggagcaccagaggcaggcagaggagaggaggaagagggaagaggaggagcgg
gagctacagcgtctccaggaggagagaaagaggaaagaaaggcaggaggaagaggagagg
aagaagagggaggaggaagagctgagatggcagaggaggagagaggaggagaaggaggag
gagaggaggcggcaggaagctgcagagcagcagcgcagagagcgggagggagccttcgag
cagcagtgggctggtggctcccatgtctttaccaatgtccagtctccactgtcctttacc
gacaggatgaaatctaaatcatctccccagcttgatgaagaggaaaaacctcagtggaaa
ggtgcgcgtgtgcagccggggggcatggctcagtggctgctggaagagcagtgtaggagt
gcgcatgacaaagaagcccggagtcagagggctgcatcagagctggagatagagaggaga
aacatcctcagtgccatgagatacagagagccagagagagtgacagacagtggagtgggt
gagaagaagggccagcagaccgcgtcgcaggcagaggctgagcggcagcagatcctgaac
gagatgaagaagaagactccgctgctgacggacagcagctggatccgccagcgtgcctcc
aacaccgccacaaccatcaaggagaccgacgtgccacccatgcgcagaggcgagtctctt
gacaacttggacgcctcctacaactcctggcgctcgtcatggacacccagaagcaactct
tatttccaaaactacactcggcctcactccgccctctccggcaccacttccttttacgga
ggcaggtcgggggcccagcggcccctgggctcctccactctgccttcctcctactccatg
agctccctccgaggcggggcaggaacccccccgtttccttggtcccagcagtcgccttcc
ccctcaccctcctcaccgtcacccaccacctctccagagcccacttctgaagcaggcgcc
cctcagcagcggagcaggtcagtgagtggcaagaaaatctgtacgttctgtgacgccccg
ctgggaaagggagctgccatgatcatcgagtcccttgggctctgttatcatttgggctgt
tttaagtgtatcgactgtaagtctgacctcggaggatcagaagccggggctgaagtcaga
atacgaaacaaacagctctactgtaacacctgctacatgcgattcaaaactggccagcca
accactatgtga
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