Siniperca chuatsi (mandarin fish): 122885458
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Entry
122885458 CDS
T08948
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04382
Cornified envelope formation
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122885458 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122885458 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122885458 (col4a2)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122885458 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122885458 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122885458 (col4a2)
Exosome [BR:
schu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122885458 (col4a2)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122885458 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122885458
NCBI-ProteinID:
XP_044072502
LinkDB
All DBs
Position
LG12:17779681..17849557
Genome browser
AA seq
1676 aa
AA seq
DB search
MSGTMQGQHNRGLTNLRLLLLCLSIANLASGVHAGGKKHSGPCGGRDCSGGCQCFPEKGA
RGQPGPLGPQGSQGPSGRPGDPGIQGPKGQKGDHGQGGNIGLKGNVGMTGVPGFSGNDGI
PGHPGQAGPRGKPGADGCNGTQGESGLPGQPGYNGAPGFPGQPGRKGAKGDSLELSVYME
RFRGDPGTPGVNGIFGPTGNPGWQGNRGFPGPKGPPGPPGPRGPKGTMTKVLKGHKGDQG
DIGLPGPPGNSTHQQTQPHSGPSGPPGEKGLKGETGDLADNKGETGVMGFPGPRGTSGAD
GSPGPRGDLGEPGPKGRDGPKGVRGDPGDLISSGSLWSWALVAGPPGPFGEQGPQGDRGP
VGDQGFPGPPGRPASETQQLVFDFIGPFGVKGEPGEKGQQGEPGLPAVSAGAPGFTGRPG
ARGPPGPKGTWAEFFKGAPGGRGRPGNAGFKGVKGDHGECECTVVNFLPGPPGPAGDRGD
AGMTGEFGQQGDVGDPGPRGDDGFPGFPGLSGLPGPKGRKGDTRVATQKGYSGDPGVLGR
DGESGAPGAPGRNGLPGFPGSRGPSGEGPSGERGDKGFPGLPGRPGAVGLRGEPGAVLGA
LKGQRGVPGDDGLAGYPGVQGTPGSPGGCSTGDGGQVDVTGPCNIIPGPPGPPGPPGPSG
SPGFPGTSGEKGLQGPLGPHGEKGETGDQGTGGRPGPPGFSGPRGDLGVPGSKGSVGNPG
VPGVPGRIGAQGEKGVHGDIFGASPGAPGDPGLPGLQGNRGQDGDQGEPGYSGMVGMPGM
IGFKGEMGPSGLQGEEGSPGPAGKYGYPGDPGRVGPPGPRGGTGQPGFSGERGTEGDPGP
PGPIGLKGIPGTYGDDGAVGDYGLTGDPGQPGEDGHPGLQGMKGNKGSPGMSGFEGIRGD
VGVKGFSGQRGQPGVLGQVGPKGVTGQSGAKGDRGLRGPPGDKPQIPAQMIVDMKGAKGD
FGRPGNQGFPGQRGIKGFPGVPGYEGTHGLPGDPSNEKGYQGDPGAQGLPGIKGMPGITG
NRGITGFEGMSGNKGIKGSTGAYGASGDNGRKGVKGDKGPRIDLPGSTGLRGEHGFPGEP
GQKGLIGQTGDRGTPGFDGIEGKKGQSGEPGILGYPGLDGQKGTPGNQGQKGFPGIPGKE
GHPGFPGFPGQKGFPGLKGLYGLHGLKGHKGIPGTPGPDTTGPAGEPGPKGEKGESGDPN
NQPGFPGTAGLKGFQGPLGDHGHPGPPGFRGPIGPDGTPDRPGPSGDPGFNGPNGYQGFP
GTRGFPGVDAPPGEKGVPGLTGFPGFPGRKGFKGDQGPFGYRGPNGVSGKKGVKGEQGVM
GVPGMIGVKGERGPTGPKGDTGPPGFRGSPGNQGPLPLPIRIPGERGPPGPQGIQGPKGV
RGEPGPQGPPGDAGFMGPIGQKGMPGIGGRPGTPGFRGEVGQMGHPGLQGMAGRRGNTGI
PGLAGMPGRSVSVGYLLVKHSQSEQTPMCPVGMAKLWDGYSLLYLEGQEMAHNQDLGLAG
SCLPRFNTMPFLYCNPGDICYYASRNDKSYWLSTTAPLPMMPVEEGEIKPYISRCSVCEA
PSVAIAVHSQDITIPQCPVGWRSLWIGYSYLMHTAAGNEGGGQSLSSPGSCLEDFRTTPF
IECNGAKGTCHYFANKHSFWLTSVDQSFHTEPASETLKAGQLLSRISRCQVCMKNL
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgagtgggaccatgcaaggacaacacaacagaggactgacgaatctgaggctgctgctt
ctgtgcctctccatcgccaatctcgcatcaggagtgcacgcgggtgggaagaagcacagt
ggtccctgtggaggaagagactgcagcggtggctgtcaatgtttcccagagaagggtgcc
agaggtcaacctgggcctcttggtcctcagggctcccaggggccttcagggagaccaggt
gatccaggcatccaaggaccaaaggggcagaaaggtgaccatggccaaggtggcaacata
ggtcttaaaggaaatgtgggaatgaccggcgttcctgggttttctggaaacgacggcatt
cctggccacccaggacaagctgggcccaggggcaagccaggtgcagacggctgtaatggg
acacaaggagaatcagggttaccggggcaacctggctataatggcgcacctggttttccc
ggacaaccaggcaggaagggagcgaagggagactctctggagctgagtgtgtacatggag
cgtttcaggggagatccaggcacaccaggggtcaacggaatatttgggcccacaggaaac
ccaggatggcagggtaacagaggcttccccggaccaaagggtcccccagggcctccaggt
ccccgtggaccaaagggcactatgaccaaagtgcttaagggacacaaaggagaccaaggg
gacatcggacttccagggccaccaggaaactctactcatcagcaaactcagccccacagc
ggaccctcgggacctcctggagagaaaggtctgaaaggagaaacaggagatttggccgac
aacaaaggagaaactggcgttatgggattccctggaccgcggggtacgtctggtgcagat
gggagtcctggaccaaggggggatctcggtgaaccaggtccaaaaggcagagatggtcct
aagggagtcaggggtgacccaggagatctgatttcatcaggatccctttggtcttgggct
ttagtagctggtcctccgggtccttttggtgagcagggtccacaaggagataggggcccg
gttggagaccaaggcttccccggacccccaggacgccccgcctctgaaacacagcaacta
gtatttgatttcattgggccatttggtgtaaagggggagccaggagagaagggccagcaa
ggggaaccaggactccctgctgtcagtgcaggagcgccaggcttcactgggcgcccaggg
gccagaggccctccaggacccaaaggaacatgggctgagttcttcaaaggggctcccggt
gggagaggaaggcccggaaatgcaggctttaaaggagtgaaaggtgatcatggtgaatgt
gaatgcactgttgtaaactttctaccggggccacctggccctgctggtgaccgcggtgat
gctgggatgaccggagagtttggtcagcagggtgatgtaggagacccaggtcccagagga
gatgacggcttccctggatttcctggactcagtggtttaccgggcccaaaaggtcgaaaa
ggggacacgagagtggccacacagaaaggatattctggagacccaggggttctcgggcga
gatggtgagtcaggagcaccaggtgctccaggccgaaatggtttgcctggcttccctggg
agccgaggtccttcaggagaaggtccgagcggagaacgtggagacaaaggtttcccaggt
ctgcctggtcgacccggtgcagttggcctaaggggagaaccaggtgcagtcctcggggcc
ctcaaaggtcaacgtggtgtacctggtgacgacggcctcgcaggctatcctggagttcaa
ggaacacctggcagcccaggaggctgtagtacaggagatggaggacaggtggatgtaaca
ggtccttgcaatattattccaggacctcctgggccgcctggacctccaggacccagtgga
tcaccaggtttcccaggcacttcaggcgaaaaaggactacagggtccacttgggccacat
ggagagaaaggagaaacaggagatcaaggcacaggtggccgtcctggaccaccaggtttt
tccggcccccgtggagacttgggggttcctggcagcaaaggttcagtaggaaaccctggt
gtgcccggtgtgcccggccggatcggggcacaaggtgagaagggtgttcacggagatatc
ttcggagcatcaccaggagcccccggtgacccggggctgcctggacttcaagggaataga
ggccaagatggtgaccaaggagaaccaggctattcaggaatggtcggcatgcctggtatg
atcggcttcaagggtgagatgggcccttcaggcctgcagggggaggaagggagtcctggg
ccagcgggcaagtatggctaccctggtgaccctgggagagtaggtccacctgggccgcgt
ggtggtactggacagccaggtttcagtggagagaggggaactgaaggagacccgggccct
ccaggtccaataggattaaaaggcatcccagggacgtacggtgatgatggtgccgttgga
gattatggcctaacaggtgacccaggacagcctggtgaagatggacacccaggacttcaa
ggaatgaagggaaacaaagggtcccctggcatgtcaggttttgaggggatcaggggtgat
gtaggggtgaagggcttcagcgggcagagaggacaacctggagtgctaggccaagttggc
ccaaaaggagtgacaggtcaaagtggagcgaaaggtgatcgtggtttgagaggaccacct
ggggacaagcctcagatccctgcccagatgattgttgacatgaagggagccaagggagac
tttggacgcccaggaaatcaaggcttccccgggcagagaggtattaagggtttccccggt
gtgccaggctacgagggaactcatggtcttcctggagaccccagcaatgagaaaggttac
caaggagatccaggagcacaggggctgccggggataaaaggaatgcctggcataactgga
aatcgaggaattactggttttgagggaatgtctggcaacaagggaattaaaggaagtact
ggtgcctatggcgcatcaggagacaacggaaggaagggagtcaaaggtgataaaggccca
cgtatagaccttccaggatctaccggattgagaggagagcatggttttccaggagaacca
ggccagaaaggattaattggacaaactggggacaggggtacacctggttttgatggtatc
gaagggaaaaagggacagtcaggtgaaccaggaatattaggatacccaggcttagatggg
cagaagggaactcctggtaaccaaggtcaaaaaggctttcctggaatccctggaaaagaa
ggacatccaggctttcctggcttccccggacaaaaagggttccccggcctaaagggtctt
tatggattacatggactgaaaggacacaagggtatccccgggacaccaggtccggatact
actggaccagctggggaaccgggacccaaaggggagaagggagagagcggtgaccccaac
aaccaaccaggttttcctggcacagcgggtttgaaaggcttccagggacctctaggtgac
catggacatcctggaccgccaggattccgcggtcccataggaccagacgggaccccagac
agaccaggacccagtggggaccctggctttaatggacctaatgggtaccaaggcttccct
ggaacaagaggatttcctggagtggacgccccccctggagaaaagggtgtaccaggatta
actgggtttcctggattccctggaaggaaaggattcaaaggagatcaaggtccatttgga
tacagggggccaaatggtgtttctgggaagaaaggagtgaaaggagagcaaggagtgatg
ggagttcctggtatgattggcgtgaagggagaaagagggccaaccggtccaaaaggagac
actggacccccaggtttccgtgggtccccaggcaaccagggtcctcttccacttcccatc
agaatcccaggagagaggggccctccaggaccgcagggtatccaaggaccaaagggggtc
agaggggaaccagggccacagggcccgcctggggatgctggtttcatgggacccattggg
cagaagggcatgcctgggattggtggtagaccaggaacgcctggatttcgtggagaggtt
ggacaaatgggccaccctggtctgcaaggcatggcaggtcgccgcggcaacactggcatc
cctgggttagctggtatgcctggccgcagcgtcagcgtgggctacttgctggtgaaacac
agtcaatcagagcagacgcccatgtgtcctgtgggcatggcgaaactgtgggacggctac
agtctgctgtacctcgagggccaggaaatggcccacaaccaggacctcggtttggctggc
tcctgcctcccacggttcaacaccatgcccttcctgtactgcaatcctggagacatttgt
tactatgccagcagaaatgataagtcctactggttgtcaacaactgctcctcttcctatg
atgcccgtagaagagggagagatcaaaccgtatatcagccgctgctcagtatgcgaagct
ccatcagttgccatcgcagtccacagccaagacatcaccatcccacagtgtcctgtgggc
tggcgcagcctgtggatcggctactcctatctcatgcatacagcggcaggaaatgaaggc
ggaggtcagtccttgtcatcgcctggctcctgcctggaggacttccgcacaacaccattc
attgagtgtaacggggccaaaggcacatgccactactttgctaacaagcacagcttctgg
cttacctccgtagaccagtcgttccacactgagccggcatcagagacgctcaaagcaggc
cagctcctgtcacgcatcagccgctgccaggtctgcatgaagaacttgtga
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