Siniperca chuatsi (mandarin fish): 122885629
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Entry
122885629 CDS
T08948
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04622
RIG-I-like receptor signaling pathway
schu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
122885629 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122885629 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
schu04054
]
122885629 (ifih1)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122885629 (ifih1)
Pattern recognition receptors [BR:
schu04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
122885629 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
Helicase_C
DEAD
ResIII
CARD
SWI2_SNF2
AAA_22
DUF3638
TFIIS_C
C1_4
Motif
Other DBs
NCBI-GeneID:
122885629
NCBI-ProteinID:
XP_044072913
LinkDB
All DBs
Position
LG12:complement(13898140..13909504)
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AA seq
991 aa
AA seq
DB search
MTSDNDDVNERLIENFRPRLREHIVVERVLDYLHCIEADQNEQIRQKARNDGNLAAVDLL
ISAVLKKPHTKGWFRAFVDALVHSGCEYAADYIQVNLPKPEVEAENDCCVQLIQILSPSL
VDMKTDEVYVHCFAQGLITQDDVEIIKATTENRGRRDGARELLGRIVRGRPGWFSNFLNI
LRETGHQYLYQLTGGSPDCDKQGSDEKLPSVKGEPTGNEADAEERTAESCDSPQFMEITV
TEEPQDSDLYQEASTESRQLPNSLEPSQPDGTDSVAAARGPEKDDIVLRDYQMEVARPAL
EGKNIIICLPTGSGKTRVAVYITKKHLDCRRTEGRSGKVVVLVNKVPLVEQHYSAEFLPF
LKHTYKLERVSGDCQLKISFTEIVKKNDVIICTAQILENYLERSNTGEDEGVDLSDLTLI
VIDECHHTQKGGVYNHIMMRYLKQKHKNKRLKKEQKEPVPLPQILGLTASPGVGGATKME
KAEEHILRICANLDASKIMTRSLGEYKKEQRKITVTVEDRKEDPFGDVIKKIMNAIHTHA
QLSPTCDLGSQNYEQWVVQQERKAATKEDQKVRVCAEHLRQYSEGLNLSNTIRMRDAFSF
LNKYQEEEKKRKTTPDEEQNIQITDTERFLFNLFKENKEELQTLAENPEYENDSLSKLRA
KILQEFSTREEARGIIFTKTRRSAIALSQWIQENPKFADIGVKASHVIGGGDQSVVKPMT
AAEQRDVLTKFRNGEVNLLIATTVAEEGLDIPACNFVIRYGLVTNEIAMIQAQGRGRAED
SSYTLVEVKNSGVAEKECVNEYRKNMMNKAIDKIRALTQANYDKRILEFQIQAIMEEKVR
MTKKKQKGMKKENPSEVKFSCRGCSKHVCTGEDIEIIENMHRVNVTTQFSNLFIQRENTT
LQERLLDYETNGFIACKDCGQRWGSMMLYRGIECPCLHVKNFVVTVNGKKISKCTKWSEL
AVKFSAFDYAEHASRVAQSSDDEETESMTTT
NT seq
2976 nt
NT seq
+upstream
nt +downstream
nt
atgacatcggacaacgatgatgtaaacgagcgtctcattgaaaactttaggccgaggttg
cgagagcatattgtggtggagcgggttctggattatttacattgtatcgaagccgaccag
aatgaacagatcagacaaaaggcgaggaatgacggtaatctcgcggctgtggatctcctc
attagcgcagtcctcaaaaagccacataccaaaggctggttcagggcgtttgtcgacgcg
ttggtgcattcaggttgtgaatatgcagcggactacattcaggtcaatctcccgaaacct
gaagtggaggcagagaatgattgctgcgtccagcttattcaaatactgtctcccagtctt
gtggacatgaaaactgacgaagtgtacgtacactgcttcgctcaaggcctgattacccaa
gatgacgtcgagattattaaagctacaacagaaaaccgtggacgcagggatggagcccgt
gaacttctgggaagaatcgtgagaggtcgaccaggatggttttctaattttctcaatatt
ctgcgtgaaactggacaccagtacctgtaccagctgactggagggtcacctgactgtgac
aagcaaggctcagatgagaaactgccttcagtgaaaggtgaacccacaggaaatgaagct
gacgcagaggagagaacagctgaaagctgtgatagcccacagtttatggagatcacagta
accgaggagcctcaagattcagacctgtaccaagaagcaagcactgaatccagacaactg
ccaaacagcttggagccctcacaaccagatggaactgactcagtagcagcagccagaggc
ccagaaaaagatgatattgttcttcgagattatcagatggaagtcgctagacctgccttg
gaggggaaaaacattatcatatgccttccgacaggaagtggtaaaaccagagttgcagtt
tatattaccaaaaaacatctggactgcaggaggacagagggacgatcagggaaagtggtc
gtcttggtgaacaaggttcctctcgttgagcagcattattccgcagagttcttgccattt
ttgaagcacacatataaactggagagagtcagcggagactgccagctcaaaatctccttc
acagagattgtgaagaaaaatgacgtcatcatttgcacagcccagattcttgagaattac
ttggagaggtctaacacaggagaggacgaaggggtggatttaagcgatctgacactgatt
gtaatagatgagtgtcaccacactcagaaaggaggagtctacaaccacataatgatgcgc
tacctgaagcagaagcacaagaacaaaaggctgaagaaggagcagaaggagcctgtgccc
ctccctcagatcctgggcctgactgcctcaccaggggtcgggggagccacgaaaatggag
aaagctgaggaacacatactgcgcatttgtgcaaacttggatgcttccaaaatcatgaca
aggagccttggggaatacaaaaaggagcaaaggaaaataactgtaactgttgaagacaga
aaagaggatccctttggtgatgtcatcaagaaaatcatgaatgccattcatacccatgcc
cagctgagccccacctgtgaccttggctctcagaattatgaacagtgggttgttcaacaa
gagcgaaaagctgcaacaaaggaagatcagaaagtgcgggtctgcgcagagcaccttcgg
cagtacagcgagggcctgaatctcagcaacaccattcgcatgcgtgatgccttcagtttc
ctgaacaaataccaagaggaggagaaaaagagaaaaacaacaccagacgaggagcagaac
atacaaatcacagatactgagagattcctcttcaatttgtttaaagagaacaaggaagag
ctgcagacgctcgcagagaatccagagtatgaaaatgacagtctgtcaaaactaagagct
aaaattctgcaagagtttagcaccagggaggaggccagagggatcattttcaccaaaaca
cgtcgcagcgccattgctctaagtcagtggattcaggaaaaccccaagtttgctgacatt
ggcgtgaaagcctcacatgtcatcggaggaggagaccagagtgttgttaaaccaatgacc
gctgcagagcaaagggacgtgttgaccaaattccgcaatggtgaagtcaacttgctgatt
gccaccacggtggcagaggaaggtttggacatcccagcgtgcaattttgttatccgatat
ggccttgtgaccaatgagattgctatgattcaggctcaaggccgaggaagagctgaggac
agcagctacactctggtcgaggtgaagaactctggggtggctgaaaaggagtgtgtcaat
gagtaccgtaagaacatgatgaacaaagccattgacaaaatccgagccttaactcaagcg
aactatgacaaacggatcttagagtttcagattcaggctataatggaggagaaggtgaga
atgacaaaaaagaagcagaaaggcatgaagaaagagaacccgtccgaggtgaagtttagc
tgccgaggctgcagcaaacatgtctgcaccggcgaagacattgagatcatcgaaaacatg
cacagagtcaatgttacaacacagtttagtaaccttttcattcagagagaaaacactact
cttcaagagcgacttctagattatgagactaatggcttcatagcatgcaaagactgtggg
cagagatggggttccatgatgctctaccgcgggatcgagtgcccctgcctccacgtgaaa
aacttcgtggtgacagtcaacggaaagaagatcagcaaatgcaccaagtggagcgagctc
gccgtcaagttttctgccttcgactacgctgaacatgcgagccgggtggcacagagctca
gatgatgaagaaacagaatcaatgacaactacgtag
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