Siniperca chuatsi (mandarin fish): 122885741
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Entry
122885741 CDS
T08948
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122885741 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122885741 (bard1)
04121 Ubiquitin system [BR:
schu04121
]
122885741 (bard1)
03036 Chromosome and associated proteins [BR:
schu03036
]
122885741 (bard1)
03400 DNA repair and recombination proteins [BR:
schu03400
]
122885741 (bard1)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122885741 (bard1)
Ubiquitin system [BR:
schu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
122885741 (bard1)
Chromosome and associated proteins [BR:
schu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
122885741 (bard1)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
122885741 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank
Ank_2
zf-RING_6
Ank_3
Ank_4
Ank_5
BRCT_2
BRCT
Ank_KRIT1
zf-RING_5
zf-RING_10
zf-C3HC4_3
zf-RING_UBOX
Afi1
Motif
Other DBs
NCBI-GeneID:
122885741
NCBI-ProteinID:
XP_044073218
LinkDB
All DBs
Position
LG12:complement(12031325..12053210)
Genome browser
AA seq
796 aa
AA seq
DB search
MDTDVLVQTKDWKNTKEAVAKFRRLLLCSKCSNLMTDPVCLGMCEHMLCRSCAGPRAGDG
CVVCHSPAWVKDIQINRQLSSIIQLFCGLESLLSPIEQPDSSLAEIQTQPESPVFKHKKN
FKIWFSPRSRKVRCMVENPSEVTVPENKSSGETAAAQPDTITAHRQDLSVFNFVSSSQDS
SCSQRCKNENRTRKKRSTKKNAASRKVSVQGTTRTTRKQSKQKMKKNRLEAINQQWGITE
EVDALKEKEHPCVEGARKSTKRVSFLSPAVTSDGPQPEVPQGSTNELSPGRSTMRETLSG
GGVTVLNGQSMSDSVVQHDRLSANDPNPTDNPEKQDNVSPPKHSSKRSRVEDKVATLETT
PKRPRASPGRKTKSQMSPAVLNPPSLASPRYDKSTKNSREEQGDSPSVLATVGRKSPSTH
RASVGRPTSGSPAVMKRNHKGETLLHLAAIKGDVEAVKELLDQGADPNLKDNAGWTPLHE
ACNLGHLAVVEALVSRGALLNTPGYENDSPLHDAVRNGHPAIVKLLLQLGASQNVLNLYG
KRPAAYAMSLEMLEIFQEASEAQYANTSLSPSASLSVSSDYVRRDEMAVFLGSKLSQPEQ
HQLAKLGELLGGKMADTFSGSVSHVMVPEGHMPTTYSTLLGLLAGCWVVKFSWVEACLQA
GKWMPETEHEAGEGPQRSRINRCSLLPPLFDGCFFFLLGSFKAPSKDELTKLLREGGGQL
LSRQPKPDSDVTQTLSAAAYHALPGSDQALCTQYIIFDPQGPHKPAVVRRGKVWSAPTTW
LINCITAFRLLPVPDS
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atggatactgatgtcctcgtgcagacaaaggactggaagaacactaaggaggcggttgcg
aagtttcgacgactgctactttgttccaaatgctcaaacttaatgacggatcctgtgtgt
ctaggaatgtgcgagcatatgctgtgcaggtcctgtgctggtccccgggcaggagatggc
tgcgtggtgtgtcacagtcctgcgtgggtgaaggacatccaaatcaacaggcagctcagc
agcatcatacagctcttctgcggtttagagtccctgctcagtcccatagaacaaccagac
tcctctctagccgagattcaaacacaacctgagagccctgtctttaaacacaagaagaac
ttcaagatctggttcagcccccgcagccgcaaggtacgctgcatggtggagaacccttca
gaggtcactgtaccggaaaacaagtcttctggagaaacagctgcagcacagccagacacc
attactgctcaccgtcaggacctgtcagttttcaatttcgtctcgtcctcccaagactct
tcttgttctcaaagatgcaaaaacgaaaacaggaccaggaagaagaggtcaactaagaaa
aatgctgccagcaggaaggtgtcggtgcaaggaaccactaggaccacacgaaaacaatcc
aagcagaagatgaagaaaaacaggctggaggccataaaccagcaatgggggatcactgag
gaggtcgatgccttaaaggaaaaggagcatccctgtgttgaaggggcaaggaagtccact
aaaagagtttccttcttaagccctgctgtcacgtctgacgggcctcagcctgaagtgcca
caggggagtactaatgaactcagccctggcaggagcaccatgagggagactctctcagga
ggtggcgtcactgtactgaatggtcagagcatgtcggacagtgtcgtccagcatgacaga
ttgtctgcaaatgaccccaacccaactgacaatcctgaaaaacaggacaacgtatctccc
ccaaagcattcctcaaaaagatcaagagtggaggacaaggtcgccacattggagaccacg
ccaaaaaggcccagggcttccccaggcaggaagacaaaatcacagatgtctccagctgtc
cttaaccctccatctttggctagccccaggtatgataagagcaccaaaaactcaagagaa
gagcaaggagacagcccctctgtcctagccactgttggtagaaaatctcccagtactcac
cgtgcatctgttggacggcccacctcagggagccctgcagttatgaagaggaaccacaag
ggagaaaccctgctgcatctagctgccataaagggagatgtagaggctgtcaaggaactg
ctggaccagggggctgaccctaacctaaaggataatgctgggtggacacctctgcatgaa
gcgtgcaaccttggtcacctggcagttgtggaggcgttggtatcaaggggagccctgttg
aatacgcctggctatgaaaatgattctccactccatgacgctgtgaggaacggtcaccca
gcaattgtcaaactgctgctgcagcttggagcctcgcagaacgtgctaaatctgtatgga
aagcgacctgcagcttacgcaatgagtctggagatgctggagattttccaggaagcctcg
gaagcccaatatgctaatacatcgcttagcccctcagccagtctctctgtgtcgagcgac
tatgtgaggagggatgaaatggctgtgtttctgggcagcaagctgtcacagccagaacag
catcaactagccaaactgggagagctactgggagggaagatggctgacaccttttctggc
tcagtgagccatgtcatggtgccagaaggacacatgcccaccacctactccacactcctg
ggtcttcttgctggctgctgggttgtcaaattcagctgggtggaggcatgtctgcaggca
ggcaagtggatgcccgaaactgagcacgaagcgggagaaggcccccagcgcagtcgcatc
aacagatgtagcttgctccctccactcttcgatggctgtttcttcttcctccttggctcc
tttaaggcgccttccaaagacgagctcaccaagctgctccgggagggaggaggtcaactc
ctgagccgccagcccaagcccgacagcgatgtgacacaaaccctgagtgctgctgcctac
cacgcactgccaggctctgaccaggccctctgcacccagtacatcatctttgacccccag
ggccctcacaagccggcagtagtgaggcgaggtaaggtgtggtcagctcctaccacctgg
ctcatcaactgcatcacagccttccgcctcctccctgtgccggactcttaa
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