Siniperca chuatsi (mandarin fish): 122886122
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Entry
122886122 CDS
T08948
Symbol
col8a1a
Name
(RefSeq) collagen, type VIII, alpha 1a
KO
K23455
collagen type VIII alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
122886122
NCBI-ProteinID:
XP_044074018
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Position
LG12:19590288..19603490
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AA seq
743 aa
AA seq
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MPPLPVPLFLTLLQLLVLTYVSGGAYYGHKQHPQQYQPMQHLQHMGMGKEGFPQQQHLGK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NT seq
2232 nt
NT seq
+upstream
nt +downstream
nt
atgcctcccctccctgttcccctgttcctgacactgctacagcttctagtacttacttat
gtgagtggtggggcatactacggacataagcaacaccctcagcaataccagccgatgcag
cacctccaacacatgggcatgggcaaagaaggttttccccaacaacagcaccttggcaaa
gaagtgccctatatgcagtatccccactacaggaaggaactaccccagatgcccatgcac
aagggcaaagaaaatgttcacaaagggggcatctataatggtggccaagacaaaggtcag
acaatccctggtggtgctgagggaattccccaaggagagccaggcccagctgggccacct
ggaccagagggacctccaggacctcctgggcctccagggaatggacaaccaggacctgca
ggacgacccggacctgctggtccaccaggattgcctggattgggcaaaccaggtttgcca
ggactgccaggcaagccaggaggaaatggtgaggctggaccacaaggagaaatgggccct
aggggtgaagaagggccagctggacagccagggccccagggtcccccaggaccacctggg
ctaccaggaataggtaaaccgggggtacagggattaccaggccaaccagggaccaaagga
gagccaggtcacaaaggtctgccaggactaccaggattaccaggacccaaaggagacaaa
gggatgggccatccaggacaacctggtcacaaagggctcccagggcccccaggaccagct
ggcccaagagggttgcctggttttggaaaacctggggtgaatggggcaccaggcccacaa
ggaccaccaggagagaaaggacatcctggagagcaaggaccagctgggtcacctggtgaa
ggaggacagcctggcccaccaggtctacctggtcaaggaaagcaaggtcaaaatggcctg
ccaggacagccaggcatgccaggtgggaaaggtcatccaggaccaccaggtttgccagga
aagccaggactgcctggatttggtaaaccaggactcctaggaccaaagggtgataaaggt
atgggtgggccacctggacctccaggaccaaaaggagataagggccatggaggactacct
ggtatgcttggaccccctgggccaaatggtccaccaggtcctccaggccctatgggaccc
ccaggaggtttaggtgcacctggacctaaaggagaatgtggagaaggaggacctaaaggg
cttgatggagctcagggagaccctggcccttctgggatacctggtaaggatggtctgctt
ggagagcctggagagccgggaccaagaggtccaccaggaccaagtggtgccaaaggagac
agtgggcataaaggtctacctggtacccctggtcttccaggaccccctgggccaaaagga
caaactggattacctggagaagtgggacctcaaggtcctaaaggaatccctggtatggat
ggtgcagcaggaccatttgggcctcctggtcttccagggccaaaaggagatagtggtcca
cctggtccaccaggcattgtaggcaaggggagtccaggtcttagtggtcctataggacct
ccaggaaaagagggcccatcaggaccccctggacaaccaggtcaggctggccctcctggc
ccaccaggcccacctggagcacctggtctgtctcccgacatggctggagtgctctctgag
atgggccctggactagatggtgttaaggcaggtagttatggtatgaagggcaagtatgga
ggcaatggggcagaagtcatgggtgccactgggttggaaatgccagcattcacagctgta
gcaacaactccctttccacctgtgggcactccagtcatctttgacaagctcttgtacaat
ggtcgccaaaactacaacccccagacaggaattttcacctgtgacatgcctggcatttat
tactttgcctaccacattcattgcaaaggagctaatgtgtgggtggctttgatgaggaac
aatgagccagtgatgtatacatatgatgaatacaaaaagggttttctagatcaagcatca
gggagtgcagtattacctctacaacctggggacactgtgtatattcagctaccctcagat
caggctgcaggactttatgctgggcagtatgtgcactcctctttttctgggtatttgtta
tatccaatgtaa
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