Siniperca chuatsi (mandarin fish): 122886243
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Entry
122886243 CDS
T08948
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122886243 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122886243 (ndc1)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
122886243 (ndc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
122886243
NCBI-ProteinID:
XP_044074108
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Position
LG13:complement(8888050..8896517)
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AA seq
672 aa
AA seq
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MFSIQQSCWFVRKVICWRAVASIAWAVLLLPPITAVFVILSRFSLLHPIQTISECLSLLT
SASAIFSLILLCGVILMVGFLNLEYYTVIPTIACSKIALFGQLLHPRQFVHSLAHCIMGI
IVAWCCAVTIGGRYETIGYPCTQIDGTDSSPQMCLNEYHLILLLAGAFVGFSHSLLGVIH
NMNYVSFHTVQQYKYLRFKGSLPLVVKCSATQALYSVRNYIVVYFFLGYIPRAWICKTLY
LHLNSSVHPLDSIAGLLDLSLLYHLWISASFLLFTWHITQLLFRIFVTEVYSFPVQPSFT
EDAHQSLPKVITNKQPMILKFLALQDLALLSQHAPSRRCEVFSLSQPGGHPHNWNAISKE
CLSLLADLTQRLVAYHDTIATNGRAKSLSTGSERKTSSETSVTSGTEDMMSPRPTLLMKT
PASVFARSIVGGPQSPLTAPFTPDLDSPLASPALRRLTAPVEQCSPWFGTVQSPHIMRRA
PKLWSTSTDSQVNGSPQPSPSSLPSPKQEPSKPSLLAQFLQNRKEQVKNFLAKRVLIMYL
FNKLPEASSQALFADSQAHIWALEGLSYLVQASYSEDQFGVVQTTLPSILSCMLVLQEAV
DRHFKLPHASSKPVRSTSSMGDSTHKTLRFALRATLKTAIYRITTTFGDHLNAVQMSAEH
RKRLQQFLEYKE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttttctatacagcaaagttgttggtttgtccgcaaggtgatttgctggagagctgtg
gccagtattgcttgggctgtcctgttgttgccacccatcacagcagtttttgtaatcctc
agcaggttcagtctcctccaccccatccagacgatatcagaatgcctgtccctattaaca
agtgcaagtgccatcttctctttaatcctgctgtgtggagtgatcctcatggttgggttc
ctgaatctggagtattatacagtcatcccaactattgcatgctcgaaaattgccctgttt
ggtcagctgctccatcctcgtcagtttgtccattccctggcccactgtatcatgggaata
atcgtggcttggtgttgtgccgtcaccatcgggggcagatatgagacaatcggctaccct
tgcacacagattgatggcactgacagttcccctcagatgtgtctgaatgagtatcacctc
atccttctgctggctggagcctttgttggattctctcacagtctgctgggtgtgatccat
aacatgaactatgtctctttccacactgttcagcaatacaaataccttcgctttaaggga
tccctgcctttggtggtgaagtgcagtgccactcaagcactttactctgtcaggaactac
attgttgtgtatttctttttgggatacattccaagagcatggatttgtaaaacactgtat
cttcatttgaacagctctgtccaccctcttgacagcatagctggactgctggacctctcc
ctgctctaccacctgtggatcagtgccagcttcctcctcttcacatggcatatcacacag
ctgctctttaggatctttgtcacagaggtgtacagttttcctgtgcagccatcttttact
gaggatgcccaccagagtcttcctaaagttattaccaacaagcagccaatgatattgaag
tttctagctctgcaggacttggctctgctgtctcaacacgccccatcacgacgctgtgag
gtcttcagtctgagtcagccaggtggccatcctcataactggaatgccatcagtaaggag
tgtctgtctctgctggctgatctgacccagagactcgtagcctatcacgacactatagca
accaatggcagggccaaatcactgtctactgggagtgaaaggaagacttcatctgagaca
tcagtaacctcaggtacagaagatatgatgagcccgaggcccactttactgatgaaaact
ccggcttcggtcttcgctcgctccattgttggcggcccacagagccctctgacggcgcca
ttcactcctgacctggacagccctttagcttctcctgccctgcggcgtcttactgctcct
gtggaacaatgctcgccatggttcggcacagtgcagagcccacacatcatgaggagagcc
ccaaaactctggtccacctccacagattcacaggtcaatggcagtccccagccatcccct
tcctcacttcccagtcccaaacaggaaccgtccaaaccaagtctcctggctcagttcctc
cagaacagaaaagaacaggttaaaaatttcttggcaaagcgggtgctgataatgtatttg
tttaacaagcttccagaagcctccagtcaagctctgtttgcagacagccaggctcacatc
tgggctttagaaggactgtcttaccttgttcaagcctcctattcagaagaccagtttggg
gttgtccagactacattacccagcattctcagttgcatgctggtcttacaagaggcagta
gatcgccacttcaagctgcctcatgcctccagtaagcccgtcaggtcgaccagcagcatg
ggagactccactcacaaaacactgcgctttgctctcagggccactctcaagactgccatc
tacaggataacaactacttttggagatcacttaaatgctgttcagatgtctgcagagcat
cggaaaagattgcagcagtttctggagtacaaggaatag
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