Siniperca chuatsi (mandarin fish): 122886397
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Entry
122886397 CDS
T08948
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03013
Nucleocytoplasmic transport
schu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122886397 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
122886397 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122886397 (thoc1)
03041 Spliceosome [BR:
schu03041
]
122886397 (thoc1)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
122886397 (thoc1)
Spliceosome [BR:
schu03041
]
Complex C
Other components
EJC/TREX
122886397 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
122886397 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
122886397
NCBI-ProteinID:
XP_044074468
LinkDB
All DBs
Position
LG13:complement(11763250..11769489)
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AA seq
654 aa
AA seq
DB search
MSPSLFNFVDAKDKFTTSARNALAGKTGKHLVNAFNQIPGNETEKKTTLDQALKGVLGDQ
IAEQKASCDDYLSLIYLSIDAVTQGICSATTPFILLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKHTEEKEDGMEVEEGEMGEDDAPAPCSIPIDYNLYRKFWSL
QDYFRNPVQCYDKFSWMTFLKFSDETLAVFKSYKLDDMQASKRKLEELRASGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSSCVLNDDQTTWIEETTKLV
YQLLREIPPDGDKFATMVEHILNTEENWNAWKNEGCSSFVKERTVDEKPKRPTRKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNQDNMEACKSDNREFMPSLDEFFAEAIEQADPANMV
EEEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPSE
EIKTGEEDDDDNGDNLLKDSNDSPSIQSKMVTNQQMDDIAPKLGSQWKTLASHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGTQATVESLVTALNAAGFSQIADSLNEA
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgtccttatttaattttgtcgacgctaaagacaaattcacgacgtctgccaga
aatgctctagctggtaaaactggcaaacatttggtaaatgctttcaaccagattcctggg
aatgagacagaaaagaagaccacacttgatcaggcgctcaagggtgttcttggtgatcag
attgcagagcagaaggcaagctgtgatgactacttgtctctcatctacctgagtattgat
gcagttacacaaggtatctgttctgctacaactcctttcattctgctgggagatgtactg
gactgccttcctcttgaccaatgtgacaaaatattctcttttgtcgaggagaatgtttcc
acctggaaatcgaattcgttttacactgccgggaagaactacttgttgagaatgtgtaat
gatcttttaaggaggctgtccaaatctcagaatactgtattctgtggacgaatccagctt
ttcctggcacgtctctttcctctgtctgaaaaatcaggtctcaatctacagagccagttt
aatctggacaatataacagtgttcaacaaaaatgaacaagaaagcactctcggccagaag
cacacagaagaaaaggaggatggtatggaggtggaggaaggagaaatgggagaggatgat
gctcctgcaccatgttccattccaattgactacaacttgtacagaaagttctggtcgctg
caggactacttcagaaaccctgtgcagtgttacgataaattctcttggatgacattcctt
aagttctcagatgaaaccttggcagtgttcaagagctacaagttggacgacatgcaggcc
tctaagaggaagctggaggagctgagagcatctggaggagaacatgtctactttgccaag
tttctaacaagtgagaagctgatggacttgcagctcagcgacagcaacttcaggcggcac
attctactgcagtacctcatcctcttccagtatctgaagggtcaggtcaagtttaaaagc
tccagctgtgttctgaatgatgaccagactacgtggattgaagagacaactaaactggtt
tatcagctgctgagagagatcccccctgatggagacaagtttgccaccatggttgagcat
atcctcaacacagaggagaactggaatgcctggaagaatgagggatgctcgagctttgtg
aaagaacggacagtagatgaaaaacccaaaagacccaccagaaaaagacaagctccagaa
gacttccttggaaaaggaccggaccgcaagattttcatgggaaatgatgagttgactcga
ctgtggaacctgaaccaagacaacatggaggcctgcaaatcagacaacagggagttcatg
ccatcactggacgaattctttgcggaggccattgaacaggccgaccctgctaacatggtg
gaggaagagtacaaggttgtgcggaacccaaactatggttggcgcgctctgagactgctg
tccaggagaagtccgcacttctttcaaccaactaaccagaagttcaagagcctggcagat
tacctagacagcatggtcagcaaactggccaaagaactgccgaaggatatcccttctgaa
gagatcaagacaggagaagaggatgacgacgataatggagacaatcttctcaaagacagc
aatgacagtccgagcatacagagcaagatggtgacaaaccagcagatggatgacatagca
cccaaactgggctctcagtggaagacgctggcttctcatttggagatgaaggcggcagag
ttgcgggagattgaaacagacagtgaagatgttgacatgcaggccaaactgctgcttgta
gcctggcaggacagagagggaacacaagctactgtggagagcctggtcacagctctgaat
gctgcaggattctcccagattgcagacagcctcaatgaggcttaa
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integrated database retrieval system
