Siniperca chuatsi (mandarin fish): 122886606
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Entry
122886606 CDS
T08948
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
122886606 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
schu01002
]
122886606 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122886606 (shhb)
Peptidases and inhibitors [BR:
schu01002
]
Cysteine peptidases
Family C46: hedgehog family
122886606 (shhb)
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Morphogens
122886606 (shhb)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Peptidase_M15_3
Hom_end_hint
Vint
Ribosomal_S6e
Motif
Other DBs
NCBI-GeneID:
122886606
NCBI-ProteinID:
XP_044074931
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Position
LG13:29503784..29510650
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AA seq
408 aa
AA seq
DB search
MVLMRVMLSVSLCLLLTSIGSGCGPGGGYGKRRHPKKLTPLALKQFIPNVAEKTLGASGK
YEGKITRNSESFKDLTPNYNPDIIFKDEENTSADRLMTQRCKDKLNSLAISVMNQWPGVK
LRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYESKAHI
HCSVKAENSVAAKSGGCFPGSSMVILADGRTKPLKELLVGDKVLAADQQGNLVPSDFLMF
MDQNRQITQEFHVLETDKQRRRLTLTPAHLVFVMNSNNSSDIRAVFASNVRLGQWLLVVG
NDRPDHLIPARVTRIYVEQYEGSYAPVTSHGTIIVDWVLASCYAVVEDHDLAHWVFVPVR
LWHSFLSLVGMVKELSSVHQADGVHWYPELLYHVGSWLLDSRSFHPQS
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggtcctgatgagagtgatgctctcggtgtccctctgcctgctgctgacgtccatcggc
tcgggctgtggaccgggcggggggtacgggaagcggaggcaccccaagaagctgacaccg
ctggctctgaaacagttcatccccaacgtggcagagaaaaccctgggagccagcggcaag
tacgaaggcaagatcacccgcaactcggagagcttcaaggacctgactcccaactataac
cccgatattatttttaaggatgaggagaacaccagcgcagaccggctcatgacacaaagg
tgtaaggacaaactgaactctttggccatttcagtcatgaatcagtggcctggggttaaa
cttcgggtcacagagggctgggatgaagacggccatcattctgaggagtctctgcactat
gagggccgagcggtggatatcaccacctcagacagggacaagagcaagtatggcatgctg
tccaggctggctgtggaggcgggctttgactgggtttactatgagtccaaagcccacatc
cactgctctgtaaaagcagaaaactctgtggcagctaagtctggaggttgcttccctggt
tcgtcaatggtgatcctggcagacggaagaactaaaccactgaaggagctcctggtgggg
gacaaggtgttggccgctgaccaacaaggaaatcttgttcccagtgactttcttatgttc
atggaccaaaaccgacagattacgcaagaattccatgtcttggagaccgacaagcaacgc
cgcagactgacactgactccagctcaccttgtctttgttatgaacagtaacaacagcagc
gacattagggctgtgtttgccagtaatgtaagactcggacagtggcttcttgttgttggg
aatgaccggccagaccacctcatccctgcaagagtgacaagaatttatgtggagcagtat
gaagggtcttatgcacctgtaacatctcatggaaccatcatagttgactgggttttggca
tcttgctatgcggtggttgaggatcatgaccttgcacactgggtttttgtgccagtacga
ctgtggcactcattcctgtcactagttgggatggtgaaagagctcagcagtgtgcaccaa
gcggatggtgtccactggtacccagagctcctctaccacgtgggaagctggcttctggac
agcaggtctttccacccacaaagctga
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