Siniperca chuatsi (mandarin fish): 122886692
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Entry
122886692 CDS
T08948
Name
(RefSeq) collagen alpha-4(IV) chain-like isoform X1
KO
K06237
collagen type IV alpha
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04382
Cornified envelope formation
schu04510
Focal adhesion
schu04512
ECM-receptor interaction
schu04518
Integrin signaling
schu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122886692
04518 Integrin signaling
122886692
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122886692
09142 Cell motility
04820 Cytoskeleton in muscle cells
122886692
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
122886692
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122886692
00536 Glycosaminoglycan binding proteins [BR:
schu00536
]
122886692
Exosome [BR:
schu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122886692
Glycosaminoglycan binding proteins [BR:
schu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122886692
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122886692
NCBI-ProteinID:
XP_044075128
LinkDB
All DBs
Position
LG13:15826174..15858527
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AA seq
1674 aa
AA seq
DB search
MGSAVTVTVTLCPLRWILVLVILVQQLNAGGNEGSCQGRDCSVCHCLPAKGAQGAPGKPG
QQGPRGPMGTWGREGPPGEKGRRGAEGSHGPQGPKGSRGKIGVPGFPGNNGSSGHPGAGG
EPGLPGVDGCNGTRGRPGVSGIPGLDGFHGLPGSPGPKGMKGDPSYGADLPGLPGEHGRD
GEHGLPGRQGEIGPKGYTGPPGPPGLKGLEGPKGLRGLPGDPGGSLAGDKGDDGEQGPPG
PQGPEEVIEFPPGFLPPRGYKGDHGLPGPCGPKGISGGRGDYCNQQIKGEQGFPGVRGLP
GFPGRDGLPEHEGFPGEKGLPGLIGRIGPKGYPGDPGLPGPLGLYNGSDARGAKGDDGYP
GLPGLPGDSGFMGMHGPPGPPGLTIPEEPGLPGLQGPPGPKGYKGEPGRYNDFESNPFPG
PKGTKGPPGPKGVTGLPGPPGCGDYYCEPGYPGDPGDLGPKGSPGDNGPKGIKGCPGECT
CRSGGGSIGPPGPPGYIGPPGLPGTQGLKGDLGLKGDEGPRGPQGFQGIIGLKGQKGQKG
DSFATGVKGAKGNQGDPGHSGPPGATGRPARDGPPGPAGDPGPPGAGYAGLHGPKGDPGV
AGPKGFPGLVGPPGPDFPGPKGLPGPKGDQGHPGPPGIPGRPGPPGEIEPCCHEDEIGSP
GPKGEPGSPGIPGEPGRDGLLGAPGYPGPKGMKGDDGETGGIGLPGPLGLKGDPGDTGPS
GISLDGPLGPPGLPGPPGRKGSPGDVFSARPGATGPPGRPGAVGTNGLRGIPGNPGSPGV
QGQPGRPGCKGEPGVNGDPGATGPPGPPCTVCDLNGPSGPPGLPGNPGLRGVPGYLGQKG
FKGDIGPPSHGQRGPQGFPGPPGVPGPAGPRGTTGPSGDPGIDGQPGQEGERGYPGRAGA
RGLPGHPGRPGPRGKQGERGFNGRPGATGDPGLPGNKGLRGPSGLPGPSGIVNVTKGPKG
LSGRKGQLGQQGPAGSKGPRGVPGDSGAEGWPGPPGFKGSTGAPGRAGIPGPPGYLGIKG
FPGPRGYLGHGGDPGDPGPRGHSGIPGLPGFPGPKGEPGQSYGQPGPPGPKGLPGEDGPS
APRGSPGDPGDPGPQGRSGQPGQPGTLGEPGRQGRPGFPGPHGPSGRPGFPGLPGDHGGL
GPPGLPGPYGPPGPPGTPGLCGLDGLRGPKGMKGASGIDIPGPPGPDGFPGVKGLRGQPG
PTAATFPGPKGQRGPPGDTGFPGLPGKPGYPGKECSMPLPGPYGDVGFEGREGPPGPPGP
LGEPGPPGHSIFKGDPGPVGLPGLPGHKGGKGLPGPPGSQNHSGFTGPKGERGPAGSGGP
LGPKGQKGEPGPWGRKGVTGSAGDAGAKGAPGDSISGCPGMAPAGLPGPRGYPGSIGFPG
DVGPPGTPGRKGQKGPKGSVGLPGVTGPHGRNGPVGDPGDVGQQGFPGPQGIPGPPGDPG
ELGHRGALRSGFLLVIHSQSVQVPRCPEGISQLWVGYSLVYLEGQEKAHTQGLGQAGSCL
PVFSTMPFSYCNKAACHYSSRNDKSYWLSTTAPIPMMPLFGQEISSHISRCVVCETVSPA
VAFHSQDHTVPACPPGWRSLWTGYSFLLHTGAGDEGGGQSLSSSGSCLKHFRTHPFIECQ
GAHGSCHYFANLYSFWLTTVSQTEQFITPRPSTIKAANQQRRKASQCHVCLREQ
NT seq
5025 nt
NT seq
+upstream
nt +downstream
nt
atgggatctgcagttactgttacagtgactctgtgccccctcaggtggatccttgtcctg
gtcatcttggtgcagcagctcaatgcaggggggaatgagggctcatgtcaaggtagagac
tgctctgtatgtcattgtcttcctgccaaaggtgcacagggagctccaggcaagccaggc
cagcaaggtccccggggaccaatgggaacatggggacgtgaaggaccacctggagagaaa
ggcaggaggggagcagaaggatcacatggaccacaggggcccaaaggaagccgtggcaag
attggtgttcctggttttcctggtaataatgggtcatcaggccaccctggagcaggcggc
gagcctggtttgccaggagtggatggctgtaatgggacaaggggtcgaccaggggtctct
ggtattcctggtttggatggtttccatgggctgccgggatcacctggacctaaaggaatg
aaaggagatccttcgtatggtgctgaccttccaggacttcctggggagcatggtagagat
ggagaacatggtctacccggaagacaaggagaaattgggcctaaaggctatactggccct
cctggccctcctggacttaagggcttggaaggacctaaaggtctgagaggactaccaggt
gaccctggaggatcactggcaggcgataaaggtgacgatggtgaacaaggcccacctggc
ccacaaggaccagaggaagtcatagaatttcctccaggctttcttccacccagaggttac
aagggagatcatggtcttcctggaccatgtggaccaaagggcataagcggtggtagagga
gactactgcaatcaacaaattaaaggagagcaaggttttcctggagtccggggtcttcca
ggatttcctggtagagatggactaccagaacatgagggtttccctggagagaaaggactt
ccaggtctcattggaagaattggacctaagggttacccaggagatccaggtctccccggt
cccctgggcctttataatggaagtgatgccagaggtgctaaaggtgacgatgggtatcct
ggattgcctggactcccaggtgactctgggttcatgggtatgcatggacctcctggccca
ccaggattaacaataccagaggagccaggtctgcctggtctacaagggccccccggtccc
aagggttacaagggagagccaggaaggtataacgactttgaaagcaatccgtttccagga
ccaaagggaactaaaggaccccccggacctaaaggtgtcacaggcctcccaggtcctcca
gggtgtggagattactactgtgagcctggttacccaggggaccctggtgatctaggaccc
aaaggatctcctggagacaatgggcccaaaggaattaaaggttgtccaggggaatgtaca
tgtaggtctggtgggggaagcatagggccccctggtccacctggttatataggacctcca
ggattacctggaactcaaggacttaagggagacctaggactgaaaggagatgagggacca
agaggaccacaaggatttcaaggaattattggtttaaaaggacagaagggtcaaaaaggt
gactcttttgcgacaggtgttaaaggtgccaaaggtaaccaaggagaccctggacattct
ggtcctcctggagcaacaggaaggccagcacgtgatggcccccctggccctgctggagac
ccgggaccaccgggtgctggatatgcaggattacatggtcccaaaggtgaccctggtgtt
gcaggacccaaagggtttccaggacttgtaggcccccctggtcctgattttccaggccct
aagggactacccggacctaaaggagatcagggacatcctggccccccaggaattcctgga
cgaccaggccctccaggtgaaattgagccatgctgtcatgaagacgagattgggtcacct
ggtcctaagggtgagccaggatcacctgggattccaggtgagccaggaagagatggtctc
ctgggagctccgggatacccaggcccgaaaggcatgaaaggagatgacggtgaaactgga
gggattggcctgccaggacctctaggtttaaagggggatccaggtgacactggtcccagt
ggaattagcctggatggccctctaggccctcctgggttaccaggacccccaggcaggaag
ggttccccaggagatgtcttttctgccaggccaggtgctactggcccacctggccgtcct
ggggctgtggggacaaacggactccgtggcattcctggaaacccagggtctccaggcgta
caaggccaacctggacgaccaggttgtaaaggagagccaggagtcaatggcgaccctgga
gccactggtcccccaggcccaccctgcactgtgtgtgacctgaatggaccttcaggccct
ccaggacttccaggaaaccctggactgaggggagtgccagggtaccttggtcagaagggt
tttaagggagatataggtccacctagtcatggacagaggggtccacaaggtttccctggc
cctcccggtgtgccaggcccagctggaccaagaggcaccactggcccctcaggagatcct
gggatagatggccagccaggacaggaaggtgaaagggggtaccctggcagagctggtgcc
agaggtttaccaggtcatcctggacgtccaggacccagaggtaaacagggagagagaggc
tttaatggtcgtccaggtgccacaggagacccaggactgcctggtaataaaggtttacgt
ggtccatcaggattaccaggaccttcagggatcgtgaatgtaacaaaaggcccaaaagga
ctttcaggaaggaaggggcaactaggacaacaaggacctgcaggctcaaagggcccaagg
ggagtgccgggtgattcaggggctgaaggatggcctggtccaccagggtttaaaggcagc
actggtgctccaggcagggcaggaataccaggacctcctggataccttggaatcaaaggc
tttcctggtccaaggggatatcttggacatggtggcgatccgggagatccagggcccagg
ggacattcaggtatcccagggttaccgggatttccagggcccaagggtgagccaggacag
tcttatggacaacctggtccacctggacccaaaggattgccaggggaggatggacctagt
gcacccagagggagtccaggagatccaggtgacccaggaccccagggaaggtcaggacag
cctggacaacccggcactctcggggaaccaggaagacaaggaagacctggctttcctggg
cctcatggcccatcaggtcgtccaggttttccaggtcttccaggtgatcatggaggtctg
ggaccaccaggcctacctggcccatatgggcctccagggccccctgggacaccaggtctg
tgtggactggatgggcttagaggtccaaaagggatgaaaggagcaagtggcatagatatc
ccaggccctccagggccagacggttttccaggagtcaaaggtctcaggggccaaccaggg
ccaacagctgccacttttcctgggcctaaaggccagaggggcccacctggcgacacaggt
tttccaggcttaccaggcaaacctggttaccctggcaaagaatgctccatgcctttgcca
ggaccctacggagatgtaggatttgaaggacgtgaaggacctccaggacccccaggtcct
cttggggaaccgggcccaccaggccacagcattttcaaaggagacccaggcccagttggc
ctccctgggttaccaggtcataagggaggtaagggcctcccaggacctcctggatcccag
aaccactcaggctttacaggaccaaaaggtgaaagaggtcccgctggttccgggggtcct
ctaggacccaaaggtcagaaaggtgaacctggtccttggggccgcaagggagtaactggc
tcagctggagacgcaggtgccaaaggtgctcctggtgattccatcagtggatgcccaggg
atggctcccgctggactcccaggaccacgtggttacccaggatctattggattccctggt
gatgtgggtcctcctgggactccagggcgtaaaggacagaagggtcctaaagggtctgtg
ggccttcctggcgtaacaggtccgcatggtcgtaatggtcctgttggagatccaggagat
gtgggtcagcaaggattccctggacctcaaggtatcccaggtccacccggtgatccaggt
gagctaggccacaggggagcgttgaggtcaggcttccttttggttatccacagccagtca
gttcaggtgccacggtgccccgaaggcatcagtcaactttgggtgggctacagtctggtc
tacttggagggacaagagaaggctcacactcaaggtctaggccaggctggctcctgcctc
cctgttttctccaccatgcctttctcctactgcaacaaagctgcttgtcactactctagt
cgcaacgacaaatcctattggctctccaccaccgctcccatacccatgatgccactcttt
ggccaggagattagctcccacatcagccgctgtgtggtgtgtgagacagtttcgcctgca
gtggcttttcacagccaggatcacacggtccctgcatgcccacctggctggaggagtctg
tggacggggtactctttcctcctgcacacaggggcaggtgatgagggtggtggccagtcc
ctgagttcttctggtagctgccttaagcatttccggactcaccctttcatagagtgccag
ggtgcccacggttcctgtcactactttgccaatctctacagtttttggctgactactgtt
agtcagacagagcagtttatcaccccgaggcctagcaccatcaaagcagccaaccaacag
cgacgcaaggccagtcagtgccatgtctgcctcagagaacagtga
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integrated database retrieval system
