Siniperca chuatsi (mandarin fish): 122886781
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Entry
122886781 CDS
T08948
Name
(RefSeq) sodium- and chloride-dependent GABA transporter 3-like
KO
K05045
solute carrier family 6 (neurotransmitter transporter, betaine/GABA) member 12
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04082 Neuroactive ligand signaling
122886781
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
schu02000
]
122886781
Transporters [BR:
schu02000
]
Solute carrier family (SLC)
SLC6: Sodium- and chloride-dependent neurotransmitter transporter
122886781
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Gene cluster
GFIT
Motif
Pfam:
SNF
WLS-like_TM
Motif
Other DBs
NCBI-GeneID:
122886781
NCBI-ProteinID:
XP_044075314
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Position
LG13:5826537..5842283
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AA seq
582 aa
AA seq
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MNKQRRKTETERRAGDRGQWASKTEYILVVAGNVVGLGNVWRFPYLCYKNGGGAFLVPYG
LLAVVCGIPLFLLETSVGQYTQEGFITSWRKICPLAQGIGFGQLMISLCFFIYILIEAWA
LFYLVFSFSSQLPWASCENTWNTANCLDLQTFNSSNVTAVQTNTTSAATEFWERRVLAMS
GGIEELGSVRWELALCLLACWVFCYFSIWKGVRSSGKVAYFTATFPYVMLLTLLIRGLTL
PGAWEGIYYYLYPDLNRLANLEVWIEAGSQILFSYSLTAGTLNVLGSYNEYNNNCYKDCF
WLCLLNSGTSFVAGFVVFSVLGFMAQKQGVNVDNVVESGPGLAFIAYPQATAMMPLPQFW
TVCFFLMLILLTVDTHFVIVESFITTVIDLFPKLFRAPLRREIFVLAICVSSFFVHLTMV
TEGGIYVFQLTDFYGSTRVCQNFMAICECLAVGWVLVSADRFSNIIEDMTGQRPSVFFKL
CWKYVNPLLSLISLILYLVDYKHLKINDWYIYPDWAYALGWTLTLTSVLMVPLWAAGQVF
LTAGTFRQRLSVLCRPAEDPAWQRNKMREEGTAVELTSAVLT
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaacaaagaagaaaaacagaaaccgagaggagggctggagacagaggacagtgg
gccagtaaaacagaatatattctggtcgttgcaggaaatgtggtcggcctgggcaacgtg
tggagatttccttacctctgctacaagaatggtggaggtgcctttctggtgccgtatggc
ctgttagctgtggtgtgtgggatacctctgttcctactggagacctcagttggtcagtac
acccaggaaggattcatcacgtcttggaggaaaatatgtccactggcacaaggaattgga
tttggacaactgatgatttcactctgtttcttcatctacattttaattgaagcctgggct
cttttctacctggtgttctcattcagttcccagctcccctgggccagctgtgagaacacc
tggaatacagctaactgtcttgatcttcagactttcaattcatctaatgtgacagcagtt
cagaccaacaccacctctgctgcaactgagttctgggagcggcgggtgctggccatgtct
ggaggcattgaggagctgggtagtgtgaggtgggagctggccttgtgtcttctggcctgc
tgggtgttctgctacttcagtatctggaaaggtgtcagatcttctggaaaggtagcgtat
ttcacagccacgttcccctacgtaatgctcctgaccttactcatcagaggcttgactcta
cctggagcttgggaagggatctattactacctgtatccagacctgaaccgcctggctaac
cttgaggtctggatagaggccggatctcaaatacttttctcctacagcctgactgcaggg
actctaaatgttctgggcagctataatgagtacaacaacaactgttacaaggattgcttt
tggctctgtctgctgaacagtgggaccagttttgttgccggatttgtcgtcttctctgta
ctcggattcatggctcagaaacagggtgttaatgtcgacaatgtggttgagtcaggtcca
ggtttggccttcattgcttaccctcaggcaacagctatgatgcctttgccacagttctgg
actgtctgcttcttcctgatgctcattctgctgactgtcgacacacattttgtgattgtg
gagagttttatcaccacagtgatcgacttgtttccgaagttgtttcgtgcacctttgagg
cgtgagatctttgtcctcgccatctgtgtatccagcttcttcgtacatctcaccatggtt
acagagggaggaatttatgtattccaactcactgacttctatggctctaccagagtttgt
cagaattttatggctatttgtgaatgcctggctgtgggctgggttttggtgagtgctgac
cgcttttctaatattattgaggacatgacaggacagaggccgtctgttttctttaaactg
tgctggaaatacgttaatcctctgctatcactgatttccttaatcctctacctggttgat
tacaaacacctcaagattaacgactggtacatttaccctgactgggcgtacgcactagga
tggactttgaccctcacctctgttctcatggtgccactgtgggcagctggacaggtgttt
ttgacagcaggaaccttcagacagcgtttgtctgtcctttgtcgtcctgctgaagatcca
gcctggcagaggaataaaatgagagaggagggaacggctgttgaactgacgtctgcagtg
ttaacttag
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