Siniperca chuatsi (mandarin fish): 122886936
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Entry
122886936 CDS
T08948
Symbol
wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33
KO
K15542
polyadenylation factor subunit 2
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122886936 (wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122886936 (wdr33)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
122886936 (wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
Beta-prop_THOC3
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_2nd
Beta-prop_EML
WDR55
WD40_Gbeta
EIF3I
Beta-prop_IFT140_1st
Beta-prop_TEP1_2nd
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
eIF2A
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_HPS5
Beta-prop_DCAF4
Beta-prop_WDR11_2nd
Beta-prop_WDR41
PEP5_VPS11_N
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
122886936
NCBI-ProteinID:
XP_044075616
LinkDB
All DBs
Position
LG13:620491..646868
Genome browser
AA seq
1119 aa
AA seq
DB search
MATDIGSPQRFFHMPRFQHQAPRQVFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIRYLENRLWQRDHRDFRAVQPDAGCYNDLVPPLGMLNNPMNAVTTKFVRTSTNKVKC
PVFVIRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFMRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKWNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
TGVEKEVGGMEMAHEGMIWSLAWHPLGHILCWVTSSAYRKFWTRNRPGDKMRDRYNLNLL
PGMSEDGMEYDDMDLNSVASIPGMGIPEQLKAAMEQEQSSKEAAPEVEMSIPGLDWGMDE
VMGKDTKKVPQKKVPYAKPIPAQFQQAWAENKVPMMPPGGDKDRKVEQKADAKKKTQAEI
EQEMAALQYTNPMLLEQMKMDRMNQMNADGNMGPPQGQGPMPSFPGAGGPGGQMPPGQQG
FPPNMPPQQMSNNMGPPMGPGGMQPPFMPPGQMGPPSGPQPHQGPPQGMMGPPDMQGTQG
MQRHPGPPRNMGSQGPHGMGPRGMQGPPGGMMGPPPRGMGPRDSQGPPPQGGMMPPQGNM
MGPQGPMQGGMMGPPPRTHGNMPNNYGMGNMQGPPGGIHGPPGNMQGPPGNMQGPHGNMQ
GPPGNMQGPHGNMQGPPGNIQGPHGNLQGPPGNIQGPHGNLQGPPYMQHQGQNSGPMMHG
MGQQGPNNKGDPRGPPPNHHMGPPDRQGPGGPDQGSGSYWGDNQQGRRGPQDFDGGQEFH
GRGEEGWRPGPGPGYQGGGGGGHRGGGHRGGGGNGGSWGPDERFTGGEYRGRRDDRYRAG
GPGRPGSRSYPDEYGGQEEGFDGPEELGRGWDNAGRGRPPRVGGPPRAGGHDGYRDGQQM
HDGSSPAGRERSSSLQGMDMASLPPRKRPWQDGPGTGDPRERESPGADGGRPPQREDGGY
GPSGRGGRGGWGPGGGPGPAPRRGGPAPRGPPRGGGRGR
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggacatcggctccccgcagcggttcttccacatgccgcgcttccagcaccag
gcgccgcggcaggtcttctacaagaggccggacttcgcccagcagcaggcgatgcagcag
ctcaccttcgacgggaaacgcatgaggaaggccgtgaaccgcaaaaccatcgactacaac
ccgtctgtcatcagatacctggagaaccgtttgtggcagcgagaccatcgagacttcaga
gccgtccagcctgacgccgggtgttacaacgatctcgtccctcctctgggcatgttgaac
aaccccatgaacgccgtcaccacaaagtttgtccggacctccaccaacaaagtcaagtgt
cccgtgttcgtgatccggtggactcctgagggccggcgtctggtcaccggagcctccagt
ggagagttcactctgtggaacggactcaccttcaacttcgagaccattttacaggcccac
gacagtccggttcgggccatgacctggtctcacaacgacatgtggatgctgacggcggac
cacggcggctatgtgaagtactggcagtccaacatgaacaacgtcaagatgttccaggct
cacaaggaggccattagagaagccagtttttctccaacagataataaatttgccacctgc
tcagacgacgggacggttcggatctgggacttcatgcgctgccacgaggagcggatcctc
cgaggtcacggtgctgatgtgaagtgtgtcgactggcaccccaccaaaggcctggtggtc
tccggcagtaaagacagccaacagccaatcaaattctgggacccaaagaccggacagagt
ctggcgacactccacgcccacaagaacacggtgatggaggtgaagtggaacctgaatggt
aattggctgctgacggcgtcacgtgaccacctgtgtaaactgtttgatatcagaaacctg
aaggaggagctgcaggtgttcagaggacacaagaaggaggcgacagcggtggcctggcat
cccgtccacgagggcctgtttgccagcggcggctctgacggctctctgctcttctggcac
actggggtggagaaggaggtcggagggatggagatggcccacgaggggatgatctggagt
ctggcctggcacccgctgggtcacatcctctgctgggtcacatcctctgcataccgtaaa
ttctggaccaggaatcggccgggtgataagatgagagaccgttacaacctgaacctgctg
cctgggatgtcagaggacggcatggagtacgatgacatggacctgaacagcgtggcctcc
atccccgggatggggatccccgagcaactgaaggcagccatggagcaggagcagagcagt
aaagaggcggctcctgaggtggagatgtccatccccggtctagactggggcatggacgag
gtcatgggtaaagacaccaagaaggtcccgcagaagaaagtaccgtacgccaaaccgatc
ccagcgcagttccaacaggcctgggcagagaataaagttcccatgatgccacccggtgga
gacaaggaccggaaggtggagcagaaagcggacgcgaagaagaaaactcaggccgagatc
gagcaggagatggcagctttgcagtacaccaaccccatgctgctggagcaaatgaagatg
gaccggatgaaccagatgaacgcagacgggaacatgggccccccacagggacagggccct
atgccctccttccctggggctggaggtcctgggggccagatgcctcctggccagcagggc
tttcccccaaacatgcctcctcagcagatgtccaacaacatggggccccccatgggcccc
ggaggcatgcagcctcctttcatgccccctggacagatggggccaccctctggaccccag
cctcaccaggggccccctcagggcatgatgggaccaccagacatgcaaggaactcaaggt
atgcagagacaccccggccctcccagaaacatgggctcccaagggcctcacggtatggga
cccagagggatgcaagggccccctggtgggatgatgggcccccctcctcgaggaatgggt
ccaagggattctcaggggcctccacctcaggggggcatgatgccacctcaggggaacatg
atgggccctcagggtcctatgcagggtgggatgatggggcccccacccaggacacacggc
aacatgccaaacaactatgggatgggcaacatgcaggggcccccgggagggatacatggg
cctccaggaaatatgcaggggcccccaggtaacatgcaaggaccccatggaaacatgcag
gggcccccaggaaacatgcaaggaccccatggaaacatgcaggggcccccaggaaacata
caaggaccccatggaaatctgcagggccctccaggaaacatacaaggaccccatggaaat
ctgcaggggcccccatatatgcagcaccagggtcagaactcggggcctatgatgcatggc
atggggcagcaggggcccaacaacaaaggagaccctcgggggccgccgcccaaccaccac
atgggccctcctgaccggcaggggcccggaggaccagaccagggctcaggttcttactgg
ggggacaaccagcagggtcgacgtggaccgcaggactttgatggaggccaggaattccac
ggcagaggggaggagggctggagaccaggtcctggaccaggataccagggaggaggaggg
ggaggccacagagggggaggacaccgaggaggaggggggaacggagggagctggggcccc
gacgagagattcaccggaggagagtacagaggacggagagacgacaggtaccgagcaggc
ggccccggccggcccggaagtcgaagttaccctgacgagtacggcggccaggaggagggc
ttcgacggcccggaggagttgggtcgaggctgggacaacgcaggcagggggaggccgcct
cgagtaggaggtccccccagagcaggaggtcacgatggttaccgggacggtcagcagatg
catgatgggtcgtctccggccggtcgcgagcgctcctcctccctgcaggggatggacatg
gcgtctctgcccccccggaagcgtccgtggcaggacggaccgggaaccggagacccgcga
gagcgagagtcaccgggagctgacggaggtcgcccccctcagagggaggacgggggttac
ggtccgtctggtcgaggtggacgaggcggctggggtcctggaggaggacctggaccggcc
cccaggagaggaggaccggcacccagaggaccaccgagggggggcggccggggccggtag
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