Siniperca chuatsi (mandarin fish): 122887222
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Entry
122887222 CDS
T08948
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03013
Nucleocytoplasmic transport
schu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122887222
03015 mRNA surveillance pathway
122887222
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schu03019
]
122887222
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
122887222
5.6.2.5 RNA 5'-3' helicase
122887222
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122887222
mRNA cycle factors
Common to processing body (P body) and stress granule
122887222
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
122887222
NCBI-ProteinID:
XP_044076149
LinkDB
All DBs
Position
LG13:complement(18750897..18766739)
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AA seq
1114 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFSLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRTSNMYFQTHDQIGMIGTGPSPMTSMNI
PIPFNLVMPPIPPPGYMGQVNGPTSGRGGMKGKAGSGGGGGTRGGRQRNRGNMGNHSGGN
GGADRGQHGGHMSGSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYL
GDEFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctaacgttcctcgacaccgaggaa
gccgagctgctgggagcggacacccagggctccgagtacgacttcaccgatttcaccctg
ccgagccagacccagacccaaggccaaacccagagtcagctggacaaccaggttaatggc
cctgatggcgtgctacagaatggagacgaccctgtggtaaaagccagtcagttgctggca
gagttgaattttgaggaggatgaggaggacacctactacaccaaggatcttcctgtacat
gcttgcagttactgtgggattcatgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgtaatggccgtggaaacacatcaggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagatggccctctgggggaaacagtgttg
gagtgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccctgccaaagct
gactcagtagtggtattactttgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtcaaaatcccttcagagcaggagcagctcagggcacgtcagatcaccgcccagcag
atcaacaagctggaggaactctggaaggaaaatcccactgcgaccttggaggacctggag
aagcctggtgtggatgaggagccccaacatgtgctgctccgctatgaggatgcctaccag
taccagaacatctttggtcctcttgtgaagctggaggccgactatgataagaaactcaaa
gagtcccagactcaagacaacattacggtcagatgggacttgggcctgaataaaaagagg
attgcttatttctctcttcccaagacagactcagacatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcccctccatggaaaggcattggacatgtcatc
aaagtccctgataactacggcgatgagattgccatagagctaagaagcagtgccggggca
ccagtggagatcccacacaattttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagtgccctgaagacatttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacatgaggtagaggatgtggtcatcaagtgccagctgcccaaa
cgcttcactgctcaaggcctgcctgaccttaaccactcacaggtgtatgctgtgaagacg
gtactgcagcgtcccctcagtctcatccagggtcctcctggcacagggaagacagtaacc
tctgcgaccatcgtctaccacctggctagacagggcaacgggccagtgctggtgtgtgct
cccagtaacattgctgtcgaccagctgacagagaagatccaccagacaggcctcaaagtg
gtgagactgtgtgccaagagcagggaggccatcgactcgcctgtgtcctttctggctctg
cacaaccagacccgtaacatggacagtatgccagaacttcagaaactccaacagctgaag
gacgagactggagagctgtcctcctcagacgagaagcgctacagagcactgagacgcact
gctgagagagagctgcttatgaatgccgatgtgatctgctgtacttgtgttggggcgggg
gatcctcgtctagccaagatgcagttccgttcaatcctgattgacgagagcacccaggct
actgaaccagagtgcatggtgcctgtcgtcctgggggccaaacagttgattctggtgggt
gatcactgccagctgggccctgtggtgatgtgtaagaaagcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttttggggatccgaccaatccgtctacaggtccag
taccgcatgcaccctgccctcagcgccttcccctccaacatcttttatgagggctctctg
cagaacggagtcactgccgcggaccgtgtgaagaaaggctttgacttccagtggccacag
cctgacaagcctatgttcttttatgtcacccaaggccaagaggaaattgccagctctgga
acatcctatctcaacaggactgaggcagccaatgtggagaaaataaccacaaggttgctg
aaggctggagcaaaacctgatcagattggcatcattacgccctatgagggacagaggtct
tacctggtccagtacatgcagttcagtggctccctccataccaaactctaccaggaggtg
gaaatagccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgatcccagacgtctcaatgtg
gcgctcactagggccaggtatggtgtgatcattgtgggaaaccccaaggccctttccaag
cagcctctgtggaaccacctgttgaactactacaaggagcagaaggtcctggttgaaggc
ccccttaacaacctgagggagagcctcatgcaattcagcaagccccgcaagctagtcaat
accatcaaccctgggggtcgattcatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtgtatgaccgcagcagcaacggacgtacgtccaatatgtatttccag
acccatgaccagattggtatgattggcacaggccctagtcccatgacttccatgaacatc
cccattcccttcaatctcgtgatgccccccatacctccaccagggtacatgggacaggtc
aatggacccacatcaggtcgtggaggtatgaaaggcaaggcaggcagtggaggaggcggc
gggactcgaggtggccgtcaaagaaaccgcggcaacatggggaaccacagtggaggaaat
ggaggagcagaccgtgggcagcatggaggccacatgagtggcagccaggccagccaggac
ctgggctcccagcccttctctcaggggcctctgacgcagggctacatcaacatgagccag
ccgtcacaaatgagccagcctgggctctcccagcccgaactctcacaggacagttaccta
ggagatgagttcaagtcccagattgatgtggcgttgtcccaggactccacctaccagggg
gagcgggcctaccaacacggtgtgactggactgtcccagtactag
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integrated database retrieval system
