Siniperca chuatsi (mandarin fish): 122887513
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Entry
122887513 CDS
T08948
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122887513 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
schu01009
]
122887513 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122887513 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
schu03029
]
122887513 (rb1cc1)
Protein phosphatases and associated proteins [BR:
schu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122887513 (rb1cc1)
Membrane trafficking [BR:
schu04131
]
Autophagy
Autophagosome formation proteins
ULK complex
122887513 (rb1cc1)
Mitochondrial biogenesis [BR:
schu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
122887513 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
122887513
NCBI-ProteinID:
XP_044076744
LinkDB
All DBs
Position
LG13:12521126..12536038
Genome browser
AA seq
1629 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAVQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTISKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVANKLSSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLMKFDTAYINYQR
DLEEIKVKLTKLGTSVSVMARIPLLECLTRHSYRESMEKSSSTPGKDSDETEEEKSTDSV
LRPTDAQRPSKLSASFSASGAATCEPTGDQETNEMTDSGGLRAALLDDDTPEFANPSSFN
VTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLADCHDTVAKLDNQNMKAIKGL
EDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIMLN
NHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDGEKLQALLRLLTELMERVRV
VEALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKLLYEAEKFKRESFGKLFRKS
FLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISVEDLQYLKSCCPVEVQPFLINIFFSR
VPTMCDFEPLNRHVETLHQLVQAAQSVDEMSKTITDLLSEQRASYSQRSTVFSPQSESTP
GTTTPMSSKTPSSLSLQGPSCQPLHVPVPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQ
QGSLDLDSLAESPESDFMSAVNEFVIEENLTSPNPISDPISPEMMVESLYSSVINAIDSK
RMQDTTTLERENSRITVLKQVIDKYRSAAEESHSNLRCVKDDLCHLRGLVLKEQHDFGFV
LRSVTTEVRNIVDNICQTHELELKEQHQNELLSLRQELEKQVQTLTEENQVNQNIVRDVQ
RAMLELEGLMERKEKELTQLENEKERWIETESNHTDRIKNLEQMISDQAEEIKTLSASRD
SLTSQLKNLHFEIERSQQKIRQELEVVEQSHLKELEDRMKQEHKAELETVTKGNQEALEH
LAAENCAKLMEAADHHATALREKDNQVKDLEARITELAELRCKLEVELALKETETEEVRL
LFEEAKMQQAETVKSQVEATTKVLSEELANFKKQLQVKNEEYEVDLAELRTLMRIEKDHC
ISELVDRHEEETILLRNELSSLQQKAQNAERNHAEQQQKLKQELNQHVAALSEEKEKQLR
SFQELEQELRTVISNLQTDNDLLSKKLEQDRQAIEKDLEKEEASKGASPHAFKELEQQKE
EMEKRLSAKIRQLENELLERESSKSDEGLPLHAEGCADAGAPLSLDSALQERLQQERASL
QSQMELLEKKKNEEIQNLKTSLIAEQQTNFNTVLTREKLKKEQIINELTEKLRKVTQQQD
KDKGLIETLSEDRASVMQEKKHLEEELNRLRSTALVSSAFFTPNPSAQEVTEAGAGAAAA
ARALSVAGAFSSESMAESDRLASVAAIRDDEHVDSAVEASMVTVHDNILMSEEKQRILLL
ERTLHMKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFT
VGPTLYFLHSESLTALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRV
KAVPWNRKV
NT seq
4890 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacattgacatttgacactgatctt
gctgtccaaactgtactggagcttaaacatgccatccaagccaaatataagattgcagtt
caacatcaggtccttgttgtcaatggaggggaatgtatggctgcagagagacgtgtctgc
agctacagtgctggcactgaaaccaaccccatattcctgttcaacaaagagatgatcttg
tgtgatcgggatccaacgatctccaaaaccaccttctcgattgagagtgagattcaggtt
aaggtggaggagtctctactgatgccagctgtctttcacactgttgcctcgcgaacacaa
cttgctctggaaatgtttgaagttgccaataaacttagctctttctgtgaacgtttggtt
catgatgaacaccttcaacaccaaggctgggctgctattatggctaatctggacgactgc
actctctcttatcagaagttgctcatgaaatttgacactgcatacataaattatcagcgt
gacttggaagaaattaaggtgaaacttacaaagttagggacatcagtttctgtaatggcc
aggatacctctgctggaatgtttgaccagacacagttacagagagagcatggagaagtcc
agctcaaccccaggaaaggattcagatgagacggaagaagaaaaatccactgactctgtt
ctccgccctactgatgcacagaggccctctaagttatcagcatccttctctgcttcgggg
gcagccacgtgtgagccaactggagaccaagaaacaaatgaaatgactgacagtggtggg
ctgagagctgcgctactagatgatgacactccagagtttgccaacccgtcctccttcaat
gtcacactattagactggatcaacgtgcaagacagacccaatgatgtggaatcagttgtg
aggaaatgctttgactccatcaatcggcttgacccacggatcattcagcccttcctggca
gattgtcatgacacagttgccaagctagataatcaaaacatgaaagccattaaggggctt
gaggacaggttgtatgctctagaccaaatgattgcaagctgtaagaagttggtgaatgag
cagaaagaacttgctcagggatttttggccaatcagaagagggctgaaaacctaaaggac
acatctgttctgcctgacttgtgtctgagtcacaccaaccagctgatgatcatgctgaac
aaccacaggaagctgctggacatcaaaaagaagtgcaccactgccaaacaagaacttgca
aacaaccttcaagtccgactcaaatggtgctgctacgtgatgcttcatgcagaccaggat
ggcgagaaacttcaggctctactcagacttctgacagagctaatggaaagagtgagggtg
gtggaggccctcagtacggtgccccagatgtactgcttggcagtggttgaagtcgtcagg
agaaaaatgtttatgcgccactacagagagtgggcatatgcacttgtgaaggacgggaaa
ctactgtacgaggcagagaagttcaaaagggaatcctttgggaaactctttaggaagtct
ttcctcagaaaccgtttgtttagaggacttgattcatggcctccaacatcattttgtaca
cgaaagcccagaaggtttgacgatgaacttccagacatctccgttgaggacctgcagtac
ttgaaatcttgttgtcctgtagaggtgcagccattccttataaatatttttttctccagg
gttcccacaatgtgtgacttcgagcccttaaatcggcatgtagagacgcttcaccagctg
gtccaagctgcacagagtgtggatgagatgtctaagactattactgacctgctaagtgag
caaagggcatcctatagtcagagatcaaccgtgttctccccacagtctgaaagcacacct
gggaccacaacaccgatgtcctccaaaaccccttcctctcttagccttcagggacccagc
tgccagcccctacacgttcccgtcccagctcctctagaggacttatccccagacagcata
gatgcacaaacatttgacttcgaaaccattggccatccgaacatggatccagtcctgcag
cagggctcccttgacttggattctctagcagaaagccctgaatctgacttcatgtctgct
gtcaacgagtttgtgattgaagagaacttgacctctccgaaccccatcagtgaccctatt
agcccagaaatgatggtggagtcgctgtactcttcagtcatcaatgctattgacagcaag
cgtatgcaggataccacaacactagagagggagaattcaaggatcactgtcctcaaacaa
gttattgacaagtaccgatcagctgcagaggagtcccattccaacttaagatgtgtaaag
gatgacctctgtcacttaagaggcctagtattaaaagaacaacatgactttggctttgtc
ttgaggagtgtgaccacagaggtgcgcaacattgtggacaacatctgccagacccatgaa
ctggaattgaaggagcagcatcaaaatgagcttctttcccttcggcaagagctagagaag
caggttcagacactaacggaggaaaaccaagtaaaccagaatattgtcagagatgtccag
cgcgcaatgttggagctggaggggcttatggagcgcaaagagaaagaacttactcagctc
gagaatgagaaagaacgatggattgaaacagaaagtaaccacacagataggatcaaaaac
ctggagcaaatgatcagtgatcaagctgaagagatcaagacgctctcagcttcaagagac
tctctgaccagccagcttaagaatctgcactttgagattgaacgtagccagcagaagatc
cggcaggagttggaagttgttgagcagtcccacttaaaggagctggaggacagaatgaag
caggaacacaaggcagaactggagaccgttaccaagggtaaccaggaggccctggaacat
ctggctgctgaaaattgtgcaaagttaatggaggcagctgatcaccatgccactgcgctt
agagagaaggacaaccaagttaaggacctggaggctcgtattactgagctggcagaactc
cgctgcaaactagaggtggagctagctctcaaagagacagagacagaagaggtgagactc
ttatttgaggaggccaagatgcagcaggctgagactgtgaagtcccaagttgaggctacg
accaaagtccttagcgaagagctggcaaatttcaaaaaacagcttcaggtaaaaaatgag
gagtatgaagtggacctagcagagctgaggactctcatgaggattgagaaggaccactgc
atctcagagctggtggacagacacgaggaggagactattttgttgcgcaacgagctctct
tccctgcagcagaaagcccagaatgctgagaggaaccatgctgagcagcaacagaaactt
aagcaggaattaaaccagcatgtggctgctctaagtgaagaaaaagaaaagcagttgagg
agtttccaagaactagagcaagagttgaggactgttatcagcaatttgcagacagataat
gacctgctctccaaaaaactagagcaggacagacaagcaatcgagaaagatttagaaaaa
gaagaggcctctaagggggcatcaccacatgcttttaaagagttagagcagcaaaaggag
gagatggagaagagactgtcagccaaaattagacaacttgagaatgagcttcttgagaga
gaatcctcaaaaagtgatgaagggttgccactgcatgctgaggggtgtgcagatgccgga
gcacctctgtctctagactcagcactacaagagcggctgcagcaggagagggcctccctg
cagtcccagatggagctcctggagaagaagaagaatgaggagatacagaacctcaagaca
tcactaatcgcagagcagcagactaatttcaatactgttctaacccgagagaagctgaag
aaggagcagatcatcaatgagctcacagagaagttacggaaagttacccaacagcaggac
aaggacaaaggtctgatagagacactctccgaggaccgagctagtgtcatgcaggagaag
aaacacttggaagaagagcttaaccgcctgcgcagcactgcactggtctcctctgccttc
ttcactcctaacccatcagctcaggaggtcacagaagctggagcaggagctgcagcagca
gctagagctctgtctgttgctggggctttttcctctgagtccatggctgaaagtgataga
ctggcctctgtggcagccattcgagatgatgaacatgttgattcagcagtggaagccagc
atggtgacagtccatgataacatcctgatgtcagaggagaaacagcggatactcttactt
gagaggactttacacatgaaggaagaagaaaacaagcgcctcagtcaaagactgatgtct
caaagcatgtcgtctgtgtcgtcacggcattcagacaaaatcgccatcagagatttccag
gtaggcgatttggttctaatcatcctggatgaaaggcatgacaactacgtgctgttcaca
gttggtcccaccctctacttcctccactcagagtctctcactgcactggacctcaaacca
gcatcagggacctcaagacggccgtgggtacttggaaaggtgatggagaaggaatattgc
caggcaaaaaaggcccagaacaggttcaaggttcctttaggaaccaagttctacagagtg
aaagctgttccatggaacagaaaagtataa
DBGET
integrated database retrieval system
