Siniperca chuatsi (mandarin fish): 122887721
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Entry
122887721 CDS
T08948
Symbol
uimc1
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
122887721 (uimc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
schu03400
]
122887721 (uimc1)
DNA repair and recombination proteins [BR:
schu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
122887721 (uimc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
CpG_bind_C
zf-WRNIP1_ubi
Prp3_C
Motif
Other DBs
NCBI-GeneID:
122887721
NCBI-ProteinID:
XP_044077119
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All DBs
Position
LG14:complement(27782108..27811068)
Genome browser
AA seq
1080 aa
AA seq
DB search
MRGRRGRSSSPGKSVSQEQNRMPLRKQIIKDAGDAPPGSQRTDEDTQEDEALDDRDDNDE
LSSSLLSPSSSREKRRRERGNKSKPKEMTEEEMMDLALRLSEQEASITALKLQKEEEAVM
KAIQESMVGQTQPCPPSQSQSLLADAGASLRLCSRRKLLYSNRKMASAIAQGASEDGCTP
ETDPNPGAKGSGDESNNRNKKRKRKEGSPLLEMPDLSQTQASPCSSESLSVALDSPQSSD
STQIDDCRPRKSPVFPSTGCRAEVHVPRLSQDLLQTCRTSGFVLCSQDSWTSPQKSPSDQ
PESPTFPQSPERSSDLTLSKSPVFSETDQGDGGETEPSPEYFKSPVFGRNTQQERSPSAC
RPQVSVCNSGFTFSSQESLTFSARSTSCRPESPVFPRSPGLPKSLPSPERSAVCTSPVFS
ETDRVQTQQNRGPVFGRTGRQKIHQDLQKHSASPSAAELGGSGSEGSSSAARGPSQSLRQ
DSKTDRNQDVRFNKSSTSDDAEGLNEISKDQNSAETELTSDMTLVWSEEDEDATPVGSPS
PVFPEERPVHRADGQAASLNHVTAASPGTNGSNCRPSSSSTSTSKQQLSTTEREPRPVSS
QGAAGGGSAPPGEPAGGPSVHYYWGVPFCPRGLDPDSYTQVILAQMEVYEKSLKRAQRCL
LRKAKWGEAVLPEPEKSPASPESPAESPQQPVPRRRGLRLGGKKTREPADASPAEAEEEG
DKKDEEEERENKEEKKNEGEGRVDTDDCEVCPETQLSDDDDGTQDLMMATDAGAELTTLS
EVEMILRGDSPAGREPRVEEEEEGMEVEVDGPVDRKTKGTNIAVGSSDVGGQSMRKEQVE
EDGGDPDVKEIKDRGLQGSTSPELDPAAVPRSPGTNVDCPICQGSFPATEIEMHAAYCDG
EVAVVDERRPEADYFHVSLKPRRKRARRAAATAEETDNPSHAGKNQEKCYICQKAVALGD
YSRHTELCIQRQASKTAAKGNLLSALEQTESKEDSEAGPSGSKLQPGDGTSSADQLTNTV
DVIDLRDDDDDEEDEQKGGVSALRISNSPIRAFTPISEATGCLIDFKKQQRAKKLSQRRR
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgagaggaagaagaggacgctcttcgtcaccaggtaaatcagtttctcaggagcagaac
aggatgcctctgaggaagcaaatcatcaaggatgccggtgacgccccccccggaagccag
cggaccgacgaagacacacaggaggacgaagctctcgacgacagagacgacaacgacgag
ctctcgtcgtcacttctgtcgccgtcgtcgtccagagaaaagcgcaggagagagcgggga
aacaaatccaaacccaaagagatgacggaggaggagatgatggacctggccctgcgtctg
agtgaacaggaagccagcatcactgcgctcaagctgcagaaggaggaggaggccgtgatg
aaagccatccaagagagcatggtcggccagacacaaccgtgcccgccttcccaaagtcag
agcctgctcgccgacgccggagcgtcactcaggctttgctctcgacggaaactcttgtac
tcaaacaggaagatggcgtctgccatcgctcagggagcgtcagaggacggctgcacgccg
gagacggacccgaacccaggagcaaaaggaagcggagatgaaagtaacaacaggaataaa
aagcgtaaaaggaaagaaggaagtcctctgctggagatgccagacttgtcgcagactcag
gcttcgccctgcagctccgagtctctctcggtggctctggactcgccgcagagctctgac
tcgacccagatcgacgactgtcggccccgtaaatcccccgtcttcccctcgactggctgc
cgagccgaggttcacgtcccccggctgagccaggacctgctgcagacctgcagaacctca
gggtttgtgctgtgctctcaggacagttggacctcgcctcaaaagtctccgtccgatcaa
cccgagagcccaacgtttccccaaagccccgaacgctccagtgacctcactttgtccaag
agtccagtcttctcagagaccgatcagggagacggtggagagacagagccgagtcctgag
tattttaaaagccccgtgtttggcaggaatactcagcaggagaggtctccaagtgcctgc
agaccccaagtcagcgtctgtaactcagggttcacgttttcgtctcaggagagtttaacc
ttctctgcgaggtccacgtcctgtcggcccgagagcccggtgttcccaagaagccccggc
cttcccaagagcctcccttccccagaaagatccgcggtctgcacaagtccagttttctcg
gagactgaccgagtacagacccagcagaatcgcggcccggtgttcggcaggacaggacga
caaaagattcaccaggatctgcagaaacactctgcgagcccttcggctgcagagctcggc
ggttcaggcagtgaagggagttcatccgctgccaggggtccttcccagagtctgaggcag
gacagcaagaccgatcgcaatcaagacgtcaggtttaacaagtcatctacgtcagatgac
gcagaggggctgaatgaaatatccaaagaccagaactcagccgagacggagctgaccagc
gatatgacgctagtctggtctgaggaggacgaggacgccacgccagtgggctcgcccagc
ccggtcttcccagaggagagacctgtccatcgggcagacggccaggctgcctccctgaac
cacgtgactgcagcttctccgggaacgaacggctcgaactgcagaccttcgtcctcttcc
acgtcgaccagcaaacagcagctttccaccacagagcgagaaccacggccggtcagcagc
cagggagcggccggcggggggtcggccccgcctggggagcctgcaggcgggccgtcggtg
cactactactggggggttcccttctgtccacgaggcctggacccagacagctacacacag
gtgatcctggcccagatggaggtgtatgagaagagtctgaagcgggcccagaggtgtctg
ctgaggaaggcgaagtggggcgaggccgtcctgccagagccggagaaatctcctgcgtca
cctgagtctcctgctgaatcacctcaacagcccgtccctcgaaggcgtggcctcagactg
ggaggcaaaaaaacgcgtgaaccagccgatgcctctccagctgaggcagaagaggaagga
gacaagaaggatgaagaggaggaaagagagaacaaagaagagaagaagaatgagggagaa
ggacgggtcgatactgacgactgtgaggtttgtccagagacgcaactgagtgacgacgac
gacgggacgcaagatctgatgatggccactgacgccggagcagagctcacaacgctgtct
gaggtcgaaatgattctccgaggcgattctccggccgggcgcgagccgcgggtggaggag
gaggaggaggggatggaggtggaggtggacggcccagtggacagaaagacgaagggaacg
aacatcgccgtcggcagcagtgacgtcggaggacagagtatgagaaaggagcaggtagag
gaggacgggggggatccagacgtgaaggagataaaggatcgagggcttcaggggtcgacg
tctcctgaactggacccagccgccgtccctcggagccccgggaccaacgtggactgtccc
atctgtcagggatccttccctgcgacggagatcgagatgcacgctgcgtactgcgacgga
gaggtggccgtcgtggacgagcggaggcccgaagccgactacttccacgtgtcgctgaag
ccacggaggaagagagcgaggagagcagcagcgactgccgaagagaccgacaacccctct
cacgcgggcaagaaccaagagaaatgttacatctgtcagaaagccgtggctctgggagac
tacagcagacacacggagctctgcatccagcggcaggcttcaaagactgcagcgaaagga
aatctgctgtcagctctggagcaaacagagagcaaggaggactcagaggccgggccgtct
ggatccaaactccagccaggcgacgggacttcctctgcggaccagctgacaaatactgta
gacgtcattgatctgcgggacgacgacgacgacgaggaggacgagcagaagggcggcgtt
tcggcgctccggatcagtaactctcccatcagagccttcactccgatctcggaggccacc
ggctgccttatcgacttcaaaaagcagcagcgagccaagaagctgagccagagacgaaga
tga
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