Siniperca chuatsi (mandarin fish): 122887797
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Entry
122887797 CDS
T08948
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122887797 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
schu03021
]
122887797 (pcf11)
03019 Messenger RNA biogenesis [BR:
schu03019
]
122887797 (pcf11)
Transcription machinery [BR:
schu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122887797 (pcf11)
Messenger RNA biogenesis [BR:
schu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122887797 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Ribosomal_60s
Motif
Other DBs
NCBI-GeneID:
122887797
NCBI-ProteinID:
XP_044077253
LinkDB
All DBs
Position
LG14:28668620..28683188
Genome browser
AA seq
1631 aa
AA seq
DB search
MDCLLINGYGIYKAGVGFPGSFSSKMDDKAAREDACREYQSSLEDLTFNSKPHINMLTIL
AEENLNFAKDIVAIIEAQISKAPSTEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICV
FEKVDENTRKSLFKLRSTWDDVFPLKKLYALDVRVNSVDPAWPIKPLPPTASASIHVNPK
FLKQSEEASSPLPVSAQPPAPVAPAPQPAPAVSQSSLTQEQLIRQQLLAKQKQLLELQQK
KIELELEQTKAQLVGGFVLPTSTPVSTPAAPKPVSQTAPVVRPWIPPQTQTDTKPPTRDP
RLNRTGPPAASQPKEHPAGKKADTTTTGSPAATPEKSSRPDKARIPRKDVSEEKPKSKSP
SPLAKSVQSKNKQVEAEIQKSADGTKKDPRLRKRTQDKTGEAKDDELKEKKRCTDKKERE
EAARAAEPARSSKGKLVNGSVTKHDREESAEKAEFKTGGNARTHARKRTRSRSRSRSPAA
SPKRKDRRSPKSRARSSSLSPSPSHKPGKPRRVRADELEHGKPSREDRLAPKKNQSESRR
SKRPAEDRHSESRDSHSPRSHDGGSKETKDAPHRWRSGWEENKHLKLPEDSHAKPGPQRH
KQYSTPTRPTTPRTPKHRLSVDANLQIPEVLNSASKKDLLRRASKRLESGEISQEDFLNM
AHQIKHFFQYQEEKQQHSETWDGSGNFSGKKQPLLTTPPSAQPRPHDGMDAAELTYYEHK
SKLRKTQVTHRAAGEEWEGEGSPDEAEEGGQSEKAGGRSAGHPPPHKYSRAPRDRQGERR
SKEREEPRPPLGPMIEEYNHGKEFPTLKSLPGLRFRRRADPREPKRSEVRFWSRGVSGSR
SVILQQGEREWNSPLTERQRYDDREEQKSGYDAPRRYGPPADSRHPDPRRPEGPPPSGTV
VHRNCPSPAGLDAPAPRFERERLSPLHQKDSAEVSPIARFESPNSEHSDDGPLNLDVPPP
HPPPPPKSILKVPPRGGPLSSVRQHSDSPGHTPPHDGGHPPSRYDGHMGPSRPHPPGWYE
GGGPGRYDDSSRFDKPHHQGPGRFDGGGPHHNMPERFDGPGQVDGPHMAHGPMRGGDGIG
RFDGPPHPQGPGRFDGPIGQQPPVRFEGQGPGPGHFEGPMQRFNMAPGPGSGPMGFQQQR
PMRFEGPPNQMGPMRFEGPGPMRFDGPVQPGPRFDIPNVPHQGAPPHYECAPGQQGPMRF
APQHNLQPPMRQMAPPIYENPMVPQQNFNMAPQRFPEPMNPQFPAGPMAFPAQPNLQQAG
NFTMQQAPPFSQLAPAPFYSPAAPAVGMQQPVNMMTNLSQPFLPQNAVPFRPQTPQVVPP
ENHFGQVDVNDLLSKLISNGIIKPSQPDAAAPPADAESSSAAAPAAPPLEEEEEEEQEPE
VEEEDVPDLTGFTIDDMKQRYESVVTKLYSGNQCCLCSMRFTAAQTDMYADHLDWHFRQN
HAGKVASKKITHRRWYYTLRDWIEFEEIADLEERAKSHFFEKENEEEVQKSQAAAKEKEF
QSVKATKDQVGELCEICQEPFETYWVEEEEDWFLKNAIRVDDKNFHPSCFEDYKNTSSYL
DVTPSPNKVLADHPLSAFVKKEEEEEEDTSCAVAAASLKQEVESEAGELPDVKKEEQEVL
TDEVQSDQNKQ
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctaatcaatggttatggtatttataaggctggtgtaggtttccccggg
tcgttcagctcaaagatggacgacaaagcagcgagggaagatgcctgccgagagtatcag
tcctcgctggaagacctgacattcaacagcaagccgcacatcaacatgctgaccattctg
gccgaggaaaacctcaacttcgccaaggatatcgtcgctattattgaagcgcaaataagc
aaggccccatctaccgagaagcttccagttttgtacttagtggattccatagtgaagaat
gttggaggagagtaccttgcagtgtttgctaaaaacctaatcacttcatttatatgtgtc
tttgaaaaggtggatgaaaacactagaaagagtctgttcaagttacgatcgacgtgggac
gatgtgtttcctctgaagaaactgtacgcgctggacgtccgggtcaactccgtggacccg
gcctggcccatcaagccgctgccgcccaccgccagcgccagcattcacgtcaaccccaag
tttttaaaacagtctgaggaggcgtcctctccgctgcctgtctccgcccagccgccggcg
ccggtagcgcccgctccccagccggcccccgccgtcagccagtccagtctgacccaggag
cagctgatccgacagcagctgctggccaaacagaagcagctcctggagctccagcagaag
aagatcgagctggagctggagcagaccaaagcacagctggttggtgggtttgtgttacca
acatcgactccggtctccactccagcagcaccgaagcccgtcagccaaactgctcccgtg
gtccggccctggatccctcctcagactcagacagacaccaagccgcccaccagagacccc
cgtctgaaccgcaccggccccccggctgcctcccagcccaaagaacatcctgctgggaag
aaagcagacacgaccacaacaggaagtcctgctgcgacacctgagaaatcctcccggcca
gacaaggccaggatccccaggaaggacgtgtcagaggagaagcccaagtccaagtcgccg
tccccgttggccaaaagtgtccagagcaaaaacaaacaggtggaggccgagattcagaag
tcggcggacggcacgaagaaagatcccaggctgaggaaacgcacgcaggacaagaccgga
gaggccaaagacgacgagctgaaggagaagaagagatgcaccgacaagaaggagagagag
gaggcggcgcgcgccgcagagccggcgaggtccagcaaagggaagctggtgaacggctcc
gtgaccaaacacgaccgcgaggagtccgcggagaaggccgagttcaagactggaggcaac
gcccgaacgcatgccaggaaacgcacccgctcgcggtccaggtcgcgctcccccgccgcc
tccccgaagaggaaggaccggcggtcgcccaagagcagagccaggagcagctccctgtcg
ccatccccctctcacaaacccggcaaacccaggagggtccgcgcagacgaactggaacac
ggcaagcccagccgagaggaccggctcgcgccaaagaagaaccaatcggagagcaggagg
tcgaagaggccggcggaggaccggcactccgagtccagagactctcattccccgcggagc
cacgacggaggcagcaaggagacgaaggacgctcctcaccgctggaggagcggctgggag
gagaacaaacatctgaagctgccggaggactctcacgcgaagcctggacctcagagacac
aaacagtacagcacgccgactcgccccaccaccccccgaaccccgaagcatcgcctcagc
gtggacgccaacctgcagatacccgaagtcctcaactccgcctccaagaaggacctgctc
aggagggccagcaagcgtctggagagcggggagatttcccaggaggacttcctgaacatg
gcccaccagatcaaacatttcttccagtatcaggaggagaagcagcagcactccgagacc
tgggacggctccggcaacttctccggcaagaagcagccgctgctcaccacgcccccctcc
gctcagccccgcccccacgacggcatggacgccgcggagctgacgtactacgagcacaag
tccaagctgaggaagacgcaggtcacccaccgagccgccggggaggagtgggagggcgag
ggcagtccagatgaggctgaggaaggtgggcagagtgagaaggcgggcgggcggagcgcc
ggacacccgccgccacataaatacagccgggcgccacgggaccggcaaggtgaacggcga
agtaaagagcgcgaagagccacggccgccgctcggccccatgatcgaggagtacaaccac
ggcaaagagttccccactctgaaatctctgccaggccttcgcttcaggaggagagccgac
ccccgagagccgaagaggtcagaggtcaggttctggagccgcggggtgtcagggtctcga
tcagtgatacttcagcagggtgagagagagtggaactcgccgctgacggagcgccagcgc
tacgacgatcgcgaggagcagaagagtggctacgacgctccgcggaggtacggcccgcct
gctgactccagacaccccgacccacgcaggccggagggacccccgccctctggcaccgtg
gtccacaggaactgcccgagtccggctggtctggacgccccggccccgaggttcgagcgc
gagcgcctgtcgcctctacaccagaaggactcggcagaggtgagcccgatcgcacgcttc
gagagtcccaacagtgagcactccgacgacgggcccctcaatctggatgtcccccctcct
catcccccccctccccccaaatccatcctcaaggtgccgccccgtggaggaccgctgtct
tctgtccgacagcacagcgactccccgggacacacgccaccgcacgacggaggacaccct
ccctcccggtacgacgggcacatgggcccctccagaccgcaccctccgggttggtacgaa
ggcggcggccccgggcgctacgatgactcgtcccggttcgacaagcctcaccaccagggt
cccggtaggtttgacggtggcggtcctcatcacaacatgccagagaggtttgacggaccc
gggcaggtcgacggaccccacatggctcacgggcccatgagaggcggagatggtattggg
cggtttgacggtccacctcaccctcaaggccctgggaggtttgatggtccgatcggtcag
cagcccccagtgaggtttgagggacaggggcccggaccgggtcactttgagggtcctatg
cagcgttttaacatggccccgggtcctggatctggaccaatgggcttccagcagcagagg
cccatgcgcttcgagggccctccaaaccagatgggcccgatgaggttcgaaggccccggt
ccgatgcgctttgacgggcccgtccagccggggcccaggtttgacatacccaacgtgccc
catcagggcgcgcccccacactacgagtgcgcccctggccagcagggccccatgaggttc
gctccccaacacaacctgcagccccccatgaggcagatggccccgcccatctacgaaaac
ccaatggtcccccagcagaacttcaacatggcccctcagcgtttcccggagcccatgaac
cctcagttccccgcggggccgatggcgttcccggctcagccgaacctgcagcaggcagga
aacttcaccatgcagcaggcgccgcccttcagccagctggcccccgcccccttctacagc
ccggccgcccccgccgtcggcatgcagcagccggtcaacatgatgacgaacctcagccag
cccttcctgcctcagaacgcagtgcctttcagaccgcagactccgcaggtcgtccctcca
gagaaccatttcggtcaggtggacgtcaacgacctgctgtccaaactcatctccaacggc
atcatcaaaccctcgcagcccgacgccgccgccccgcccgccgacgccgagtcgtcttct
gcggcggctccggcagctcctccgttggaggaggaggaagaggaggagcaggagccggag
gtggaggaggaagacgtcccagacctcaccggcttcaccatcgatgacatgaaacagcgt
tacgagagcgtggtgaccaagctgtactcggggaaccagtgctgtctgtgcagcatgagg
ttcaccgccgctcagaccgacatgtacgccgaccacctggactggcacttcaggcagaac
cacgccgggaaggtcgccagcaagaagatcacgcaccgccgctggtactacaccctcagg
gactggatcgagtttgaggagatcgccgacctggaggagcgagcgaagagtcacttcttc
gagaaggagaacgaggaggaggtccagaagagccaggcggccgcgaaggagaaggagttc
cagagcgtgaaagccaccaaggaccaagtgggcgagttgtgtgaaatctgtcaggagccg
ttcgagacgtactgggtggaggaggaggaggactggttcctgaagaacgccatcagggtc
gacgacaagaacttccatccctcctgcttcgaagattataaaaacacgtcctcgtacctc
gacgtcacgccgtcgcccaacaaggtgctcgctgaccacccgctgagcgccttcgtgaag
aaggaagaggaggaggaggaggatacttcctgtgctgtcgccgccgcctcgctcaaacag
gaagtcgagtctgaggccggcgagcttcccgatgtgaaaaaggaggagcaggaggtttta
acagacgaagtgcaatctgatcagaataaacagtaa
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integrated database retrieval system
