Siniperca chuatsi (mandarin fish): 122887838
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Entry
122887838 CDS
T08948
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04270
Vascular smooth muscle contraction
schu04625
C-type lectin receptor signaling pathway
schu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
122887838
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
122887838
09153 Circulatory system
04270 Vascular smooth muscle contraction
122887838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122887838
Membrane trafficking [BR:
schu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
122887838
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
Motif
Other DBs
NCBI-GeneID:
122887838
NCBI-ProteinID:
XP_044077359
LinkDB
All DBs
Position
LG14:24192893..24241592
Genome browser
AA seq
1484 aa
AA seq
DB search
MSGTQSTLTDSSQMTFKTSSLSQKGNLELLESCIKIRTPSILNKDPTDKKPKNEKSSVSL
KHEFDPTGLVQRCVIIQRDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNG
TLVTHSNHIEVVKLIKSGSYVALTVLGRPPGLPQISLEEGEEEEKEERAEVSPPSSLSAP
HSPALPGGEQCSPVTSSTSCRPQEHITSSPPDGDENKTMHSQKANMLQKMLTKEQQDLQA
KEEEYSRNPRPKLLKEIQEAKKHISLLQEQLSKAALQDGATVSRDGEAEEGDGGPPLKEQ
TPSLRGDSGNDGPTTNSNSIQISPLPENPGKSETPCQSPDVSRRDGLNFCLSPDTEDTPD
TDSSAQCVMGSPPYLLNPQIIGAEDDYFDSQQEQINGQCSCFQSVDLLKSRPAHLAVFLH
HVVSQFDPAPLLCYLYADMHKQTSSKESRRFFLEFHSLFMDRTANLKVPVPEAVAAELEK
RRLELIPEELCKQYTQVLQDTLLPDLHKNLEDFRQKRSMGLTLAEDELSKLDSEQGKDQQ
ALEKECSCAEHILSKIDDILLTSQPTEEEKCQTMQYVILTYMKHLGVKANEPRGLEHKRA
RINFLPKIKKSIKPEKEGEEKVKKPRFPNILGPPRRLSRVDSTSVGKAVELNKQRSPKQL
SQPAFGIPKQSDLNSGRIRGNQLSEGSDTSTQFLPSTTSSIHSSPTGQASDTSGQDSDSN
VSPFCIHPRLGEGLQSSDHQDGVSSPTSTQFDFSPSNLEQLQEQDQETFSRMEVQCAVSS
ADIQSEDDQGGEMECEEDPLNWQSLVSRGVLASLTPQEIKRQEVINELFYTERSHLRMLK
VLDCVFYQRLNRDGILPQEDIKHIFINLEEIIQLHVSVTEQMTAIRKRSETSVIGQIADD
LLAWFSGEEEEKIKRAVGTFCSNQPSALELIKSRQKKDQRFTLFMQEAESNRLCRRLQLK
DFIPVEMQRVTKYPLLLDKIAKYTEDGEERDKVKKAGECCKKILNHVNQAVKEAENKQRL
EEYQRRLDLSSLKQSENPMIQELKNLDLTKRKMVHEGPLSWKVNKDKAIELYTILLEDIL
VLLQKQDERLVLKLHGKNLASAADTKHIFSPIIKLNTVLVRPVATDNKSFFVLSMSENGA
QIYELMAQTVSDQRTWQCLITQCADAMKAKPHNRDTPPAQSDAERDAIEIIKCEMPKASK
DPNGTSSGSILSSDKDAASSPDIQAPPSMNPFDGVKSEDEEEELAVADRQEEEEDDEEVD
EAELEAFLDGQLADRLPFLQEGSRQGIAIENQEHNAFDIPSSKGEEALRTLAMLKQALFN
HMISREAEEEKEDTEESKQSGAPGCQLSASLPGSPKGPCDESRASASSQKDNPQLPSGHS
GLSETAERNGGFVVLDFGGGSEESSTDDDGGLGCDVGIDMRKLLSSSSQTGGGGPNLSRQ
LMTHLRLLQADLQYLKEVEMKYNELRQTHSDPATDSDDNNDGIQ
NT seq
4455 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcacacagtcaacactcactgacagttcacagatgacgtttaaaacatcatca
ttgagccagaaaggaaatttggaattgttggaaagctgtatcaaaattaggaccccaagc
attctcaacaaggaccccacagacaagaaacctaagaatgagaaatcctctgtctccctc
aagcatgagtttgaccctacaggtcttgtccagcggtgtgtgataatccagagagatgaa
aacggctttgggctgactgtaagtggagacaaccctgtgtttgtgcagctggtgaaagaa
gatggagctgcaatgcgagctggtgttcagacaggagataggatcattaaggttaatggg
accttagttacacattcaaaccacatagaagttgtaaagctgataaaatcgggttcctat
gtagccctgacagtgctggggaggcctccggggcttcctcagatctccctggaggaggga
gaggaggaagagaaggaggaaagggcagaggtcagcccaccctcctccctctcagcgccc
cactcacctgcactgccaggtggcgagcaatgcagccccgtgaccagcagcacgtcctgc
cgtccccaggagcacatcacctcctctccgcctgatggggatgagaacaaaaccatgcac
agccagaaggccaacatgctgcaaaagatgctaacgaaggagcagcaggacctacaggca
aaggaggaggagtacagcagaaacccccggcctaaactactgaaggagatccaggaggct
aagaagcacatttcactgctgcaggagcagctcagcaaagccgcattacaggatggagcc
actgtgtctagggatggtgaggctgaggagggggacggtggacctcctctgaaggagcag
accccgtccttgcggggtgacagtggtaacgacgggcccacgaccaacagtaactctatt
cagatcagccccctcccagagaaccccggcaaaagtgagacaccctgtcagagcccggac
gtcagccgccgagacggcctcaacttctgcctatcgcccgacactgaggacacccctgac
acagactccagtgctcagtgcgttatgggtagccctccctacctcctcaacccccagatc
atcggagcagaagatgactactttgactctcagcaagagcagattaatgggcagtgtagc
tgtttccagagtgtagacttgctgaagtctcggccggctcacctcgcagtcttcctccat
catgttgtctcgcagtttgaccctgcgcctttgctctgttatctctacgctgacatgcac
aagcaaaccagctccaaagaaagccgacgcttcttcctggaattccactcactctttatg
gatcgaacagcaaatcttaaagtaccagtgccagaggcagttgcagctgaattggagaag
cggaggctggagttaatcccagaggagctctgcaaacagtacacccaggtgttacaggac
acactcctaccagacctgcacaagaacctggaagatttcagacagaagcgcagcatgggt
ctgactctggccgaagacgagctgtctaagttggactcagagcaaggaaaagaccaacag
gccttggagaaggaatgctcctgtgctgaacacatcctctccaagatagatgatatcctg
ttgacgtcacagcccacagaagaggagaagtgccaaacaatgcagtatgtgattctcacc
tatatgaagcaccttggggtgaaagcgaatgagcctcgtggcctcgaacataaacgagcg
cgcatcaatttcctgcccaagattaagaagagtatcaagcctgagaaggagggtgaggag
aaggtgaaaaagcctcggtttcccaacatccttggcccgcctcggcgtctgagcagagtg
gattccacttcagtcggtaaggctgtggagctgaacaagcagcgatcgccaaagcagctc
tctcagccagccttcggcatccctaagcagtctgacttgaattctggacggatccgtgga
aatcagctcagtgagggatcggacaccagcacccaatttttgccttccaccacctcctct
atacacagctcgcccactggtcaggcctcagataccagtgggcaagactcagactccaat
gtgtctccattctgcatccatcccagactgggagagggtctgcagtctagtgaccaccag
gacggcgtctccagtccgaccagcactcagtttgacttcagcccctccaacctggagcag
ttacaggagcaagaccaggaaactttcagtaggatggaggtgcagtgtgccgtgagttca
gctgacatccagagtgaagacgaccagggaggtgagatggagtgtgaagaggaccctctg
aactggcagagtctggtcagccgaggcgtcctggcaagcttaacgccacaggagattaaa
cggcaggaagtcatcaatgagctgttctacactgagcgttcccacttgcggatgctgaag
gtgttggactgtgttttctaccagaggttgaacagagacggtatcctcccccaagaagac
atcaaacacatctttattaacctggaagaaatcattcagctgcatgtttctgtgacagag
caaatgacagcaatcaggaagaggagtgagacatcggtgatcggtcagatcgcagatgat
ctcctggcgtggttcagcggggaggaagaggagaagataaaaagagcagtgggaactttc
tgtagtaaccagccgtctgcactggagctcatcaagagcaggcagaagaaagaccagagg
ttcacgttattcatgcaggaagctgagagcaaccgtctgtgtcgcaggctgcagcttaag
gacttcattcctgtagagatgcagagagtgaccaagtacccacttctactggacaaaatt
gccaagtacacagaagatggtgaggagagggacaaagtaaagaaagctggtgaatgctgc
aaaaagatcctcaaccacgtcaaccaggccgtcaaagaagctgagaacaaacagaggcta
gaggagtatcagagaaggttggacctctcgtcactcaaacagagtgaaaaccccatgatc
caggagctgaagaatctggacctgaccaagcggaagatggtgcatgagggacctctctcc
tggaaagtcaataaagacaaggcaattgagctgtacacgattctcctggaggacattctg
gttttactgcagaaacaggacgagcgtctggtcctcaaactccacggcaagaatctggcc
agtgccgccgacaccaaacacatcttcagccccatcatcaaacttaacactgtcttggtt
cgtccagtagcaactgacaacaagtctttcttcgtgctgtccatgtcggaaaacggggct
cagatctatgagctgatggctcagacggtgtctgatcagagaacgtggcagtgtttgatc
acgcaatgtgctgacgccatgaaggccaaacctcacaacagagacacacctccagctcag
tctgatgctgagcgggacgctatagagatcatcaaatgtgagatgcccaaggcgagcaaa
gatcctaacggcacatcaagtggaagcatcctttcttcagataaagatgccgcctcttct
ccagacattcaagctccaccgagtatgaacccgtttgatggcgtgaaatcagaagacgag
gaagaggagctggccgtggcagatagacaggaggaagaggaggatgatgaagaggtggat
gaagcagaactagaggctttcttggacgggcagctggcagacagactccctttcctgcag
gaagggtcacgtcagggcatcgccattgaaaaccaagagcacaacgcattcgacattccc
tcctccaaaggtgaagaggctctcaggacattggcgatgctgaagcaggctcttttcaac
cacatgataagcagagaggcagaggaagagaaagaggacacagaggagagcaagcagagt
ggggcccctgggtgtcagctgagtgcctctttgcctgggagccctaaggggccctgtgat
gagagccgagcatctgcaagctcacagaaagacaaccctcagctcccctcaggacactca
ggactgtctgagacagctgaacgcaatggtggttttgtggttctggattttggtgggggc
tcagaggagagcagcactgatgatgatgggggattaggatgtgacgtggggatcgacatg
aggaaactgctgtcctcctcctcgcagacagggggcggcggacccaacctcagcaggcag
ctcatgacccacctgcgcctcctacaggccgacctgcagtatctgaaggaggtggagatg
aagtacaacgagctgcgacaaacacacagtgacccggctactgactcagatgacaacaat
gatgggattcagtga
DBGET
integrated database retrieval system
