Siniperca chuatsi (mandarin fish): 122888194
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Entry
122888194 CDS
T08948
Symbol
cltca
Name
(RefSeq) clathrin, heavy chain a (Hc) isoform X1
KO
K04646
clathrin heavy chain
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04142
Lysosome
schu04144
Endocytosis
schu05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122888194 (cltca)
04142 Lysosome
122888194 (cltca)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
122888194 (cltca)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122888194 (cltca)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
schu04147
]
122888194 (cltca)
Membrane trafficking [BR:
schu04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
122888194 (cltca)
Exosome [BR:
schu04147
]
Exosomal proteins
Proteins found in most exosomes
122888194 (cltca)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
122888194
NCBI-ProteinID:
XP_044078213
LinkDB
All DBs
Position
LG14:complement(6062605..6100462)
Genome browser
AA seq
1679 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQTQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPVKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAASFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATSGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRLAVRNNLAG
AEELFARKFNNLFAAGNYSEAAKVAANAPKGILRTPDTIRRFQSVPTQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKAVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVLYAKKVGYTPDWIFLLRNVMRINPEQGLQFAQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQISVQVASKYHEQLTTQALTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVVGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYISRLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKDLVKEAIDSYIKADDPSAYME
VVQAADKSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGNEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALNNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLSWFLQ
EDKRECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDKLETSESL
RKEEEQATETQPIVYGTPQLMLTAGPSVPVAPQQAYGYGYQAPAGYSQPAAQPGFGYGM
NT seq
5040 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccaaaacttagggatc
aatccagccaacataggctttagcaccctaaccatggaatcggataagttcatctgtatc
cgggagaaggtgggcgagcagactcaggtggtgatcattgacatggcggaccccaataca
cctatccgcaggcccatctcagccgacagcgccatcatgaatccagccagcaaggtcatt
gcacttaaagacgccgccaaaacccttcagatcttcaacattgagatgaagagcaagatg
aaggcgcacaccatgacagatgatgttaccttctggaagtggatctcccttaacacagtt
gcacttgtgactgacaatgccgtctaccactggagcatggagggtgactcacagcctgtg
aaagtctttgaccgccattccagcctggcaggctgccagatcatcaactaccgcactgat
gccaagcagaaatggctcctgctcatcggcatctcagcccagcaaaatcgggtggtggga
gccatgcagctctactctgttgacagaaaggtttctcagcccatcgaaggccatgctgcc
agctttgcccagttcaagatggaggggaatacagaggagtcaactttgttctgctttgct
gtcagaggccaggctggagggaagttgcacatcattgaagtggggaccccaccaactggc
aaccagccatttccaaagaaagcagtggatgtgttcttccccccagaagcccagaacgac
tttcctgtggccatgcagataagctccaagcaagatgtggttttccttattaccaaatat
ggctacattcacttatatgacttggagacaggcacctgcatctacatgaaccgcatcagc
ggagagaccatctttgtcaccgctccacatgaggccacgtcaggcatcatcggggtcaac
aggaagggacaggtactgtcagtgtgtgtggaagaggaaaacatcatcccctacatcact
aacgtgctgcagaatccagatctggctcttcgcttagctgtccgcaacaacctcgccggt
gctgaagagctctttgcacgcaagttcaacaacctgtttgctgctggcaactactctgag
gctgccaaggttgctgctaatgcaccaaagggtatcctgcgaaccccagacaccatccgt
cgcttccagagtgtaccaactcagccaggccagacctcccctttgctgcagtactttggt
atcctgttggaccagggccagctcaacaagtttgagtccctagagctttgcaggcctgtc
ctccagcagggacgaaagcagcttctggagaagtggctgaaggaagacaagttggagtgt
tcagaggaactgggtgacctggtgaaggcagtggatcccaccttggctctcagtgtctac
ctgagggccaacgtgcccaacaaagtcatccagtgctttgcggagactggtcagttcccc
aagatcgtcctgtacgccaagaaggtgggctacactccagactggatctttctgctcagg
aatgtgatgcgcatcaacccagaacaaggcctgcagtttgcccagatgctggtccaggat
gaagagccactggctgacatcacacagatcgtggatgtattcatggagtacaacctgatc
cagcagtgcacctcattcctgctagacgctctgaagaacaacagaccctcagaaggacca
ctgcagactcgcctgctggagatgaacctcatgcatgctccacaggttgctgatgccatc
ctgggcaaccaaatgttcaccaactatgatcgtgcccacattgcccagctgtgtgagaag
gctggactcctgcaaagggcactggagcactacaccgacctgtacgacattaagcgcgct
gtggtgcacacacacctgctcaacccagagtggctggtgaacttctttggctccctgtca
gtggaggactctctggagtgcctcagggctatgctgtcggccaacatccgccagaacctg
cagatcagtgtccaggtggcttccaagtaccatgaacagctcaccacacaggctctcacc
gagctctttgaatcctttaagagctttgaaggtctgttctacttcctgggctctattgtg
aacttcagtcaggaccctgaagttcacttcaaatacatccaggccgcctgcaagacgggc
cagatcaaagaggtggagagaatctgtagagagagcaactgctatgaccctgagcgcgtc
aagaacttcctcaaggaagccaaactcactgaccagctaccactcatcatcgtctgtgac
cgttttgactttgtccacgacctggtcctctacctgtaccgcaacaacctgcagaagtac
attgagatctatgttcagaaggtgaatcctagccgtctgcctgttgtggttggtggtctc
ttggatgtggactgctcagaggatgtcatcaagagcctgatcctggttgtcaggggacag
ttctctactgatgaacttgtagctgaggtggaaaagaggaacagactgaagctgctgctg
ccctggctggagtctcgtatccacgaaggctgtgaggagcccgctacacataatgccctg
gccaagatctacattgacagcaacaacaaccccgaacgcttcctgagggaaaacccgtac
tatgacagccgtgtggtgggaaagtactgcgagaagagagacccccacctggcctgtgtg
gcctacgagagaggacagtgtgaccaggagttgatcaatgtctgcaatgagaactccctg
ttcaagagcttgtctcgctaccttgtccgccgcaaagaccctgagctgtgggccagcgtg
ctgctggagagcaaccccttcagacggccgctcattgaccaggtggtgcagactgcactg
tcagaaacccaggacccagaggaggtatcagtcacagtcaaggccttcatgaccgcagac
ttgcccaacgagcttattgagctgctggagaagattgtgttggacaactctgtcttcagt
gaacacagaaatctgcagaacctgctaatcctaacggcgatcaaagctgaccgtacccgt
gtgatggagtacatcagcaggctagacaactatgacgctcccgatatcgctaacattgcc
atcagcaatgagctcttcgaggaggcctttgccatcttcaagaagtttgacgtcaacacc
tctgcggtgcaggtgctgattgagcatattggcaacctggaccgggcctatgagttcgca
gaacgctgcaatgagccagctgtgtggagccagctggctaaggctcagctacagaaggac
ttggttaaagaggccattgactcctacatcaaagccgatgatccctctgcatacatggag
gtggtacaggctgctgataagagcggtaactgggaggacttggtcaaattccttcagatg
gctcgtaagaaggcccgtgagtcctacgtggagacagagctcatctttgccttggccaaa
accaatcgcctggctgaactggaagagttcatcaacggacccaacaatgctcacatccaa
caggttggtgaccgctgctatgatgagaaaatgtatgatgcagctaagctgctatacaac
aacgtctccaactttggtcgtctggcctcaactctggtgcacctcggggagtaccaggct
gctgtggacggcgcccgtaaggccaacagcacccgcacctggaaagaggtgtgctttgcc
tgcgtggatggaaacgagttcagactggcccagatgtgcggtctccacatcgtggtgcac
gctgacgagttggaggagctgatcaactactaccaagaccgcggttactttgaggagctg
atcaccatgttagaggccgccctgggcctggagcgcgctcacatggggatgttcacggag
ctggccatcctttactccaagttcaagccccagaagatgagggagcatttggagctcttc
tggtccagagttaacatcccgaaggtcctgagagcagcagaacaggctcacctgtgggcc
gagctggtcttcctgtacgacaagtacgaggaattcgacaacgccatcatcaccatgatg
aaccacccaacagatgcctggaaggagggacagttcaaagacatcatcaccaaggtggcc
aatgtggagctgtactacaaagccatccagttctatctggagttcaagcccttgttactg
aatgatttgctcatagtactttcccccagactggaccactcccgtgctgtcaacttcttc
agcaaggtgaaacagctgcctctggtcaaaccctacctgcggtcagtgcagaaccacaac
aacaaatcagtcaatgaagcacttaacaacctcttcatcacagaggaggattatcaggca
ctgaggacatcaatagatgcctacgacaactttgacaacatctcactggcccagcgcttg
gagaagcacgagctgattgagttcaggagaatcgctgcctacctcttcaagggcaacaac
cgctggaaacagagtgtggagctctgcaagaaagacaagctctataaggatgccatgcag
tatgcgtctgagtccaaggacacggagctggcagaggagctgctgtcctggttcctacag
gaggacaagagagagtgttttgctgcctgcctgttcacctgctacgacctgctgcggcct
gatgtggtgctggagaccgcctggaggcacaacatcatggacttttctatgccatacttc
attcaggtcatgagggagtacctcagcaaggtagataaactagaaacctcagagtcccta
aggaaagaggaggagcaggcaacagagacgcaacccatcgtctatggcacaccccagctg
atgctgacagcaggccccagcgtacctgtggcccctcagcaagcttacggctacggctac
caggcccctgcaggatacagtcagcccgcagctcagccaggctttggctatggcatgtaa
DBGET
integrated database retrieval system
