Siniperca chuatsi (mandarin fish): 122888219
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Entry
122888219 CDS
T08948
Symbol
ddx52
Name
(RefSeq) probable ATP-dependent RNA helicase DDX52
KO
K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:
5.6.2.7
]
Organism
schu
Siniperca chuatsi (mandarin fish)
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
schu03009
]
122888219 (ddx52)
Enzymes [BR:
schu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122888219 (ddx52)
Ribosome biogenesis [BR:
schu03009
]
Eukaryotic type
90S particles
Helicases
122888219 (ddx52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Ribosomal_S7e
SecA_DEAD
Motif
Other DBs
NCBI-GeneID:
122888219
NCBI-ProteinID:
XP_044078261
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All DBs
Position
LG14:complement(13199222..13207277)
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AA seq
686 aa
AA seq
DB search
MWTDHAAAEMDAFELFRKLGAGAKFDLKRFGQDAARFKVVRSQGVDASSHSLSAIDYFGT
GPTNGAQSSSVGLEEDEVGSEIGDSGAGGKRKQKDEERDVRTKKKKTKRNQFEVEAGGIP
LKDTQGNGITWTSSLDRKIQNLPSDGKEKFSLKRLKHLHQEKVNRIRSQHRINVHGCDIP
DPVCTFEELQSEYHLNQRVIQNLKEAGLNSPTPVQMQAIPLMMHGRELLACAPTGSGKTL
AFCLPLLAHLQQPANLGFRAVIISPTRELASQTYRELLRLSEGVGFRVHIIDKASLAAKK
YGPQSNKKYDILVSTPNRLIFLLKRDPPALDLSSVEWLVVDESDKLFEGGKTGFREQLAT
VFLACSGSKVRRAFFSATCTSDVEQWCRLNLDNLVSVNIGHRNTAVETVEQELLFVGTEN
GKLVAMRDIIKKGFLPPMLVFVQSIERAWELFHELVYEGINVDVIHADRTQQQRDNVVNS
FRSGKIWVLICTALLARGIDFKGVNLVLNYDFPTSSVEYIHRIGRTGRAGHQGKAITFFT
ENDKPLLRSIANVIKQAGCPVPDYMTGFKKIHSKVKRRLEKKPPTRSTICTTPRFLMKKK
GKAPNKEQKGDKQASGGEQKGESGSQVESGKVQQQKGEKKTKGQGLKKRNKTQKKGGTEK
HKKAAQKTGSNSSGAKLKMKRKPQEE
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atgtggacagaccacgctgctgcagaaatggacgccttcgagttgtttcggaaactcgga
gcaggagctaaatttgacttgaagaggtttgggcaagacgccgctcggtttaaggttgtc
aggtctcagggagtggacgcgtcctcacatagtctctctgcgatcgattactttggcaca
ggaccaaccaatggagcccagagcagctctgtgggactggaggaggacgaggtgggaagt
gaaattggagattctggtgcaggtggtaaaaggaagcaaaaggatgaagagagagacgtg
aggacaaaaaagaaaaagacgaaaagaaaccagttcgaggtggaagctggtggcataccg
ctgaaagacacacagggaaacggcatcacctggacctcctcattggacagaaagatccaa
aacctgccgagtgatgggaaggagaaattctcgctgaagaggctgaagcatcttcatcag
gaaaaggtgaatcgtattcgctctcagcaccgtataaatgtgcacggctgtgacataccc
gaccctgtgtgcacgtttgaggagctgcagtccgagtatcatctcaaccagcgggtcatt
caaaacctcaaagaggcagggctgaattctccgacgcctgtacagatgcaggcgataccg
ctcatgatgcatggtcgggagcttctggcctgcgctcccacaggatcaggaaagactttg
gctttctgtcttcctctgctcgcacacctgcagcagccggccaacctgggcttcagagct
gtgatcatctccccgaccagagaactggccagccagacctacagagagctgctccgcctg
tcagagggagttggatttagagttcacatcatagacaaagcctctctggcagccaagaaa
tatggaccacagtcgaacaaaaaatacgatatactcgtcagtactcccaacagactcatc
ttccttctaaagagggatcctcctgctctcgacctcagcagtgtggagtggctagttgtc
gatgagtccgataagctgtttgagggcggtaagacgggcttcagggagcagctcgccaca
gtttttctggcctgttctggttcaaaggtgcgcagggctttcttcagcgcaacctgcaca
tcagatgtggagcagtggtgccgtctgaacctcgacaacctggtgtctgtcaacattgga
cacagaaatacggcagttgagacggtggaacaggagctgctgtttgttgggacggagaac
ggcaaactggtggccatgagggacatcatcaagaaaggtttcctgcctcccatgctagtg
tttgtgcagtctatagagcgagcatgggagcttttccatgagttggtgtatgaaggcatc
aatgtagacgtgatccacgcagaccgcacacagcagcagagggacaatgtagtcaacagt
tttcgctccggaaagatttgggtattgatctgcacggctctgctcgccagaggaatcgac
ttcaaaggagtcaacctcgtgctgaactatgacttccccaccagctctgtggagtacatc
caccgaattggtcggactggtagagctggacatcaggggaaggccatcaccttcttcaca
gaaaatgacaaaccactgctgcgcagcatcgctaatgttataaaacaagctggctgtcct
gtacctgactacatgactggcttcaagaagatacatagcaaagtgaagcgaagacttgag
aagaagcctcccacgagaagcaccatttgcacaactcctcgcttcttaatgaagaaaaaa
ggcaaagcaccaaataaagaacagaaaggagacaagcaggcctcgggtggagagcagaaa
ggagaaagtggatctcaagtggaaagtggaaaagtgcagcagcagaaaggggaaaagaag
acaaaaggacaggggctgaagaaaagaaataaaacacagaaaaaagggggaacagaaaaa
cacaagaaagcagctcagaagacgggatcgaattcctctggagccaagttaaaaatgaaa
aggaagccacaggaggaatag
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