Siniperca chuatsi (mandarin fish): 122888337
Help
Entry
122888337 CDS
T08948
Symbol
vps11
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog isoform X1
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu04140
Autophagy - animal
schu04148
Efferocytosis
schu05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
122888337 (vps11)
04148 Efferocytosis
122888337 (vps11)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
122888337 (vps11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
schu04131
]
122888337 (vps11)
Membrane trafficking [BR:
schu04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
122888337 (vps11)
Hops complex
122888337 (vps11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_N
VPS11_C
zf-C3HC4_2
Clathrin
TPR_Vps41
zf-rbx1
zf-C3H2C3
zf-RING_2
zf-C3HC4
zf-RING_5
TPR_GEMI5
Beta-prop_EML_2
zf-ANAPC11
CCDC106
ToxA_N
zf-RING-like
TSGP1
zf_RING_Vps8_fungal
Kbp-5
Motif
Other DBs
NCBI-GeneID:
122888337
NCBI-ProteinID:
XP_044078603
LinkDB
All DBs
Position
LG14:1960191..1970157
Genome browser
AA seq
945 aa
AA seq
DB search
MAAFLQWRKFVFFDKDTVKDPADNGKNFVLPSGISACDSGRGHIVLGDMDGKVWLLTRSL
QLTFFQAYKLRVTHLYQLKQHSILVSVGQDEHGINPLVKVWNLDKRDSGNPLCTRIFPAI
PGNKPTEVSCLSVHENLNFMAIGFTDGSVVLTKGDITRDRHSKTLTLHEGTSPVTGLAFR
QVAKVTHLFVATLEKVHCYTLSIKEYPKVELDTHGCALRCSSLADPSQDSQFIVAGDECV
YLYQPDERGPCFAFDGQKLLAHWHRGYLFLLIRDAKSPNKTEFGSRESSPSDKQLLTIYD
LDNKFIAYSASFDDVIDVVAEWGSFYILTRDGKMFVLQEKDTQTKLEMLFKKNLFVMAIN
LAKSQHLDSDGLSEIFRQYGDHLYLKGDHDGAIQQYIRTIGKLEPSYVIRKFLDAQRIHN
LTAYLQALHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKVTNGCHIITPLSSRTVPQQS
SESEVHFDVEIAIKVLRQASYHSHAVFLAEKHMHHEWYLKIQLEDLKNYQEGLRYIGRLP
FEQAESNMKRYGKTLMHHVPEGTTLLLKGLCTNYQPSGDAAEKDSLDRGWVNKANSEEFI
PIFANNPRELKAFLEHMIEVDPCSPQGVYDTLLELRLQDWAHEQDPERKKVLQGEAVSLL
RSDNTVFDKALVLCQMHNFKEGVLYLYEKGKLYQQIMHYHMQNEEYGKVVEACKRYGDQE
GCLWEQALGYFARKEEDCKAYISEVLHHIDQNNLMPPLLVVQTLAHNSTATLSVIKDYLI
NKLQRESQQIEDDERKIHQYREETAYLRSEIQELKTSAKIFQKTKCNMCNSPLELPSVHF
LCSHSFHQHCFESYAESEAECPTCTPENRKVMDMLRAQDQKRDLHDHFNRQLRSSNDGFS
VVADYFGRGVFNKLTLVTDPPGSKTVGSLEVNLQRDLLIHTKRNC
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgttcttacagtggagaaaatttgtcttctttgataaagatacggtgaaggac
cctgcggataatgggaaaaactttgttcttccaagcggaatatcggcttgtgactccggc
cggggccatattgttctaggagatatggatggcaaggtctggcttttgacacgctccctg
cagttgacattttttcaggcctacaagttgcgggtaacacacctctaccagctgaagcag
cacagcatccttgtatcagtggggcaggatgaacatggaataaaccctctagtaaaggtc
tggaaccttgacaagagagacagtggaaatcctctctgcactaggattttccccgcaatt
cctggcaacaaaccgactgaagtgtcttgcctcagtgtacatgagaacctcaacttcatg
gccattggcttcacagatggcagtgtggttttgaccaaaggtgatatcaccagagatcgt
cacagtaaaactctgactctgcacgagggaaccagcccagtcacaggcctcgctttccgc
caagtggcaaaggtcacacatctgtttgttgccactctggagaaagtccattgctacacc
ctgtccatcaaggagtatcctaaagtagagcttgatacacacggctgtgcactgcgctgc
tcctccctggcagatccctcccaggattcccagttcattgtggctggcgatgaatgcgtg
tacctgtatcagcctgatgaacgagggccctgctttgccttcgatggacaaaagctgttg
gcccactggcatcgtggatatctgtttttactcatcagggacgccaagtcacccaacaag
acagagtttggtagcagggagagctctccatcagacaaacagcttctgaccatctatgac
ctggacaacaagttcatcgcctacagtgcctcttttgatgatgtcattgatgtggtggca
gagtggggctccttctacatcctgaccagagatggaaaaatgtttgttcttcaggagaaa
gacacgcagaccaaactggagatgctgtttaaaaagaacctgtttgtgatggccataaac
ctggctaagagccagcatctggacagtgatggactgtcggagatcttcagacagtacggt
gatcacctttaccttaagggagaccatgacggtgccatccagcagtatattcgcaccatt
gggaaactggagccatcgtacgtcatcaggaaattcctggatgcgcagaggatccacaac
ctgacggcatatctgcaagccctgcacaggcagtcgctggccaacgcagaccacaccaca
ctgctgctgaactgttacaccaagctgaaggacagctccaagctggaagagttcattaag
gtcaccaatggctgccatattataacaccgttgtcctcccgcactgtacctcaacagagc
agtgaaagtgaggtccactttgatgttgagattgccatcaaggttcttcggcaggccagc
taccacagccacgctgttttcttagctgagaaacacatgcaccacgaatggtacctgaag
atccagctggaagacctcaagaactatcaggaagggctgcgttacattggacggctgcct
ttcgaacaagctgagagcaacatgaagcgttacggcaagacactgatgcaccatgtccct
gaaggtaccacgctgctcctgaagggcctatgcaccaactaccaaccaagcggagacgct
gctgaaaaagacagcctggataggggttgggtcaacaaggccaactccgaggaattcatc
ccaatttttgccaacaaccctcgggagctgaaagccttcctggagcacatgatcgaggtg
gacccatgttctccccagggtgtatatgacacactgctggagctccggctgcaagactgg
gcacacgaacaggaccctgaaagaaaaaaggtcctgcagggggaagctgtgtcgctgttg
aggagtgacaacactgtgtttgataaggccctggtcctctgccagatgcacaacttcaaa
gaaggtgtcctctacctttatgagaagggcaaactgtaccagcagataatgcactaccac
atgcagaatgaggagtacggaaaggtggtagaggcctgcaagcgctatggggaccaagag
ggctgcctttgggagcaggcgctgggatactttgccagaaaagaagaggactgcaaggcc
tacatcagtgaggtcctacatcacattgaccaaaacaacctgatgcctccattacttgtg
gtgcagacactggcacacaactcgacggccactctctccgtcatcaaggactacctcatc
aacaagctgcagagggagagccaacagatagaggacgatgaacgcaaaatccaccagtac
cgcgaggaaactgcttacctccgctccgagatccaggaactcaaaacgagtgccaagata
ttccagaagaccaaatgtaacatgtgcaacagccctttggagctgccgtctgttcatttc
ctgtgcagccactccttccaccaacactgcttcgaaagctacgctgagagtgaggctgag
tgcccaacctgcactccagagaaccgcaaagtcatggacatgctgcgggcccaggaccag
aaacgggacctgcatgaccacttcaacagacagctacgcagctctaatgatggtttctct
gtcgtggctgactattttggccgaggagtgtttaacaaactgactctggtcaccgacccg
cctggcagcaaaactgttggcagtctagaagtcaacctgcagagagaccttctcatccac
accaagagaaactgctag
DBGET
integrated database retrieval system
