Siniperca chuatsi (mandarin fish): 122888602
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Entry
122888602 CDS
T08948
Symbol
pcdh1a
Name
(RefSeq) protocadherin-1 isoform X1
KO
K16498
protocadherin delta 1
Organism
schu
Siniperca chuatsi (mandarin fish)
Pathway
schu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
schu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
122888602 (pcdh1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
schu01009
]
122888602 (pcdh1a)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
schu04515
]
122888602 (pcdh1a)
Protein phosphatases and associated proteins [BR:
schu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122888602 (pcdh1a)
Cell adhesion molecules [BR:
schu04515
]
Cadherins
Protocadherins
122888602 (pcdh1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Syndecan
Motif
Other DBs
NCBI-GeneID:
122888602
NCBI-ProteinID:
XP_044079173
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All DBs
Position
LG14:8641670..8724750
Genome browser
AA seq
1190 aa
AA seq
DB search
MELNLRVVLFWVLVLHCGSAEGSILYRVQEEQPPNTLIGSLAADQGLPDSGHLYKLEVGA
PYLRVDGKTGDIFTTEIPIDRETLRDCRSLAKGKPCYLEFEVSVTDLIQNQSPRLIEGRI
EVQDINDNTPQFPSSVLTISVPENTIMGALFSIPLATDRDSDRNGVADYALTAGPDAATL
FGLQVADDRGGKLPQLIVLGNLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVTDANDN
SPKFEKSTYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQAVDPVPKLLRIDRST
GIIYVKGPLDREEISSLSFYVVARDKGPQPKSSKTFVTIEVTDQNDNAPAVEIRGIGLVT
HSEGVANISEDMPVGTAVALVQVSDKDEGENAVVTCVVAGDVPFQLRPASDSSSDNKRKY
FLQTTTPLDYERVRDYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPIFSPTLFEVDFA
EENQPGEKVLDVTASDADSGTNAELLYNILADSSIKGLFEIDPNTGEVRARSPLDREHKE
RYEFRVTAADKGSPVHKGTATVVIKVLDRNDNDPKFMLSGYSFSVLENMPPLSPVGMVTV
LDVDKGENAHVHLSVEPDGGKFVVQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGVTINVLDENDNDPVVTKPSNSSFRRLSPLASPDSHVEVVEAEDLDSGPNAELVFSI
AGGNPYQLFRISPSSGEITLAKEMTRKHGGLHRLVVRVSDRGKPARHATALVHIYVNETI
SNVSLVEALVGHSLYTPLDRDIAGDPDNGFAAQRSNILFGSLAGVAGVVMLILVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQAPKNAKGKRGRKEKPQKSPKPLGEEEEVSLQKSLK
FNLDGVSDSPRIHLPLTYSPGSPDIGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAA
NTFVGTGGDDNSTGSDQYSDYSYKTSQAKYNNKQHSHRRVTFSTANPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGETEHPENDIRSLPDVAMTGN
CTTECSELGHSDACWMPGHPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGGEEHR
PRLPPSRSAYSNSGHDASQDCPLEEMPLSVASEFPPTSPSAHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaactgaatttacgagtagtgctgttttgggtcttggtgctgcactgtggttctgct
gaaggcagtatcctgtaccgggtccaggaggagcagcctcccaacactcttattggtagc
ctggcagcagaccagggcctgccagactcgggtcatctctacaagctggaggtgggtgcc
ccttaccttcgtgttgatggaaagacgggagacattttcaccacagagattcccatagac
agagagaccctgagggactgtcgatccctggctaagggtaagccgtgctacctggaattt
gaagtatcagtgacagatctgatacaaaaccagagcccacgacttattgaaggacgcatt
gaggtacaggacatcaatgacaacactccgcaatttccctcttctgtgctcaccatctct
gtcccagagaacacaatcatgggggcactattctccatacctctagctacagacagagat
tcagacaggaatggtgtcgcggattatgctctgactgcagggccagacgcagctacctta
tttggtttacaggtggctgacgacaggggggggaagctcccacagctcattgtcctgggc
aacctagatcgcgagttaaaggattcctatgacctcaccatcaaggcagtggatggagga
aaccctcagcgctacagcagtgctttgctgagagttgtagtcactgatgctaatgataac
tctcccaagtttgaaaaatccacgtatgaggcagaagtgtcggaaaacagtccagtgggg
cactctgtgttgcaggtcaaagcaaatgactctgacatgggccctaatggagaaattgag
tacacccttcaccaagcagttgacccagtgccaaaactcttacgaattgatcggtccacc
ggcattatctatgtcaaaggaccactggacagggaggaaatcagcagcttgtccttctat
gtggtggcaagggataagggtcctcaacctaaaagctcaaagacatttgtaaccattgag
gtgactgaccaaaatgacaatgctccagctgtcgagattcgtgggattggccttgtgaca
cacagtgaaggagtggctaacatttcagaggacatgccagtgggaacagccgttgctttg
gtgcaagtgtctgacaaggacgagggagagaatgctgtagtcacttgtgtggttgcagga
gatgtgcccttccagctccgccctgccagcgactcatccagtgacaacaagaggaagtat
ttcctacagaccaccactcctcttgactacgaaagggttagggattaccgagttgagatt
gtggctgtggattctggaaatccagcactctctagtacaaactctttgaaggtgcaggtg
actgatgtgaacgataactctccaatattctccccaaccttatttgaggtagattttgcc
gaagaaaaccaaccaggggagaaggttttggatgttacagcttctgatgctgacagtgga
actaacgcagaactcctctataatattttggcagactcatccatcaaaggtctgtttgag
attgacccaaacacaggtgaagtaagagcccgaagcccgcttgaccgtgagcataaagaa
cgctatgagttccgggtcactgcagcagataaagggtcacctgttcataaaggaacagca
actgttgtaataaaagtccttgaccgcaatgacaatgaccccaagttcatgctcagtggc
tacagcttttcagttttggaaaacatgcctcccctcagtccagttggcatggtgacagta
ctggatgtagacaaaggtgagaatgctcatgttcacctctctgtagagcctgatggaggg
aagtttgttgttcaaaatggaacaggcaccattctttcaagcatctcatttgacagggag
aaagaaagcagctatactttccgtctaaaagcagtggatggaggagaaccacccaggtct
tcatatgtgggcgttaccatcaatgtactggatgaaaatgacaatgaccctgtggtcacc
aagccctccaattcctccttcaggcgcttgtcacctctagcttccccagatagccatgtg
gaggtagtggaagctgaagacctggatagtgggcctaatgcagagctcgtcttcagtatt
gctggtggaaacccataccagttatttcgcatctccccatccagtggggagatcactcta
gcaaaagagatgacccgaaaacatggtggactacatcgcctagtggtgcgagtgagtgac
aggggaaagcctgcacgtcatgccactgccctggtccacatctatgtcaatgaaaccatt
tcaaatgtcagcttagtggaggccttagttggacacagtctttacactccactagacagg
gacattgctggtgatcctgacaatggttttgctgcacagcgtagtaacattttgtttgga
agccttgctggtgtggcaggtgttgtcatgttgatcttggtggtggtatttattcgacac
cgtatccagagagaaacaaagagtgggtatcaggctggcaagaaggaaacaaaggactta
tatgcacccaaacaggcaccaaagaatgccaaaggcaaacgaggaaggaaagaaaaaccc
cagaagtccccaaaaccacttggggaggaggaggaggtcagccttcaaaagagtctcaag
ttcaaccttgatggagtcagtgatagccccaggatacacctgcccttaacatattcacca
ggaagccctgatataggcaggcactaccgctccaactcccccttaccctccattcagctg
caggcccaatccccctcagcctcacagaagcatcaggctgtccaagaccttcctgctgcc
aacacctttgtgggaacgggaggtgatgacaactctaccggctcagaccagtactcagat
tatagttacaagaccagccaagcaaagtacaacaacaaacagcattcccatcggcgagtg
accttctccaccgccaaccctgtgcaggacctgcaggatgcctctcagcacagctactat
gacagtggcttggaggaatcggagactcccagcagtaagtcatcgtctggtcctcgcatc
ggacccctgaccctgcctgaggaccactatgagagaaccactccagatggcagcattgga
gagaccgagcaccctgaaaatgatatccgctccctccctgatgtggcaatgaccggaaac
tgtacaaccgagtgcagcgaattgggccactcagacgcctgctggatgcccgggcatccc
tcccctgtacgcaagaccaggaaccccccgaaactctccaccttcgtgccttaccaggag
agagggagcctgggacgcctggcaaacgggagcgccaggctgggtggcgaggagcatcgg
ccgcgccttccgccctcccgtagtgcctattccaacagtggtcacgacgccagtcaggac
tgccccttagaggagatgcccctgagcgtagcctctgagttcccacccacttccccttct
gcccacactccaaaaagagaaatttacctgtga
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