KEGG   Siniperca chuatsi (mandarin fish): 122888804
Entry
122888804         CDS       T08948                                 
Symbol
thoc2
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
schu  Siniperca chuatsi (mandarin fish)
Pathway
schu03013  Nucleocytoplasmic transport
schu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:schu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122888804 (thoc2)
  09122 Translation
   03013 Nucleocytoplasmic transport
    122888804 (thoc2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:schu03019]
    122888804 (thoc2)
   03041 Spliceosome [BR:schu03041]
    122888804 (thoc2)
Messenger RNA biogenesis [BR:schu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     122888804 (thoc2)
Spliceosome [BR:schu03041]
 Complex C
  Other components
   EJC/TREX
    122888804 (thoc2)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    122888804 (thoc2)
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 122888804
NCBI-ProteinID: XP_044079608
LinkDB
Position
LG14:10357461..10384033
AA seq 1564 aa
MATLILPGEWIKNWEKSGKHEFVQLCKELTEKPDHGSEIRDIQAALYELCWQVVQGNLKL
DLVASVLGDMMELRDDMPSILADVFSILDLETGALEEKNKRDHYTQLVGACLFFVPEVIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHLVLESIKSLIGCFNLDPNRVLDIILEVYESRSDQDEFFLSLIKSYMCEPLTLC
HILGFKFKFYQEPNEETPKSLYHIAAALLHHNLIELEDLYVHLMPLDATIVEEHKRDISE
AKQIARKLVMVVLPSEKSEDKEKEKEKEEEKNEKPPDNQKLGLLEALLRIGDWHHAQSIM
DQMPFFYATSHKAIALALCQLVHLTVEPLYRRAGLPKGAKGCVMHPLRNKRAPRPAESFE
DLRTDTFSMLGYLGPHLSHDPILLAKIVRLGKAFMKEYQSDGRPDVKDKMETLLSCFLSI
ADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYSSHPLLVKVKAQTV
ERAKYIMKRLTKENVKQSGRQIGKLSHSNPTILFDYMLSQIQWYDNLIVPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTN
QLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDVLLDHELALPLCLLMAQQRNGVVFLEGGEKHLKLVGHLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYAHQILSKYDELKKAEKGNRQQQKV
HKYVAACEQVMTPVHEAVMSLHPARVWDDLRPQFYATFWSLTMYDLAVPHAAYEREVNKL
KAQIKAIEENPEIPLNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLA
KSTKNETITKFLQLCLFPRCIFSSIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSAIIY
TVASCTENESHRYGRFLCCMLETVTRWHSDRAIYEKECVNYPGFLTIFRATGFDGGNKAD
QLDYENFRHVVHKWHYMLTKASVHCLETGDYTHIRNILIVLTKILPCYPKVLNLGQALEC
RVHKICLEEKDKRPDLYALAMGYSGRLKSQKVHMVPENEFHHKDQPARSATPANQQNGPG
STGKPATSTSKTEEGTSEDSDRGKDKSQGTTKPVNKANSAAAKVTTSNGNGALNSTKVTK
ERDDKEKSGKEKKEKKEKTPGSTPETKAENRREKQRDERAGKEERAVREGKEKTPKADRE
KVKAEEKSSKDDKAKAGNGEPVEPSRERDTIKESKSKEKGDRSAVAGSLKSPVPRSEPAE
LERDHKRRKLDSHSSPSHSSSVKDNSNEPKESTSKHHVNYNSVARSKSREREMEKKDSDS
TQGRSKEKKEEKDRKDRKRDSAVNDRETSQESKRKKDENGTNSSKNSKSTSPSCDSPLSA
EKEKSKRSKSSSKEKAESVKPERTSSGGKKESRHDKEKSEKKEKRDSSGGKEEKRHHKSS
DKHR
NT seq 4695 nt   +upstreamnt  +downstreamnt
atggcgacacttatcctccctggtgaatggatcaaaaactgggaaaaatcaggaaaacat
gagttcgtacaactctgcaaagaacttacagagaaaccagatcatggaagtgagattaga
gatatacaagccgccttatacgagctctgctggcaggttgtacagggtaacctgaagttg
gatcttgtcgccagcgtccttggggacatgatggaactccgggatgacatgccatcaatt
ttggcagatgtgttcagtatactagatttagagaccggtgcactggaagaaaaaaacaaa
cgtgaccattacacacaactggtgggagcgtgtttgttttttgttccagaggtcatcctg
aaagagaggctggatccagaaacccttgaatctcttggacttataaaacaagcccatcag
ttcaatcagaagattgtaaaaatcaagactaagcttttttacaagcaacagaagtttaac
ttgctaagggaggagaacgagggctacgccaagctaatcactgagcttggccaagacctc
tcaggcaacatcaccagccatcttgtcctggagagcatcaagtccctcataggatgtttc
aacttagaccctaatcgtgttttggacataatcctggaggtgtatgagagtcgatccgac
caagatgagttcttcctgtctctcatcaagtcctacatgtgtgagccactcaccctttgc
cacatcctgggctttaagttcaaattctaccaggagcccaacgaggaaacccccaagtca
ctctaccacattgctgctgctctgcttcaccataacctgatagagctggaagatctctac
gtacatcttatgccactagatgccaccatcgtagaggaacacaaacgagatatctcagag
gccaagcagatagctcgtaagctggtcatggttgtgttgccctcagagaaaagtgaagac
aaagaaaaggagaaagaaaaggaggaggagaagaatgagaagccacctgataaccagaag
cttggtctgctggaagcactacttagaattggagactggcaccacgcccagagcattatg
gaccagatgcctttcttctatgctacttctcacaaggccattgcgctggcactctgccag
cttgtgcacctgacagtggaacctctttacagaagggctggcctcccgaaaggggcaaag
ggatgtgtaatgcatccactgcggaacaagcgggccccacggcctgcagagagctttgag
gacctacgcacggacacattcagcatgcttggctacctgggccctcacctctcccatgac
cctatcctcctcgccaagattgtgcgtctgggcaaggccttcatgaaagagtaccaaagt
gatggcagacctgatgtcaaagacaaaatggaaacactattgagttgtttcctgagcatt
gcagaccaggtgctactcccttctctctctctgatggagtgtaatgcttgcatgtctgag
gaactgtggggtctgttcaaactctttccctaccagcacaggtatcggttatatggacaa
tggaagaatgagacatattccagccatccactgttggttaaagtcaaagcacagactgtg
gaaagagccaaatacattatgaagcggttgaccaaagagaatgtgaaacaatctggaagg
cagattggcaagctgagccatagcaatcccaccatcctctttgattatatgctgtctcag
atccaatggtacgacaacctcatcgttccagtggtggactccttgaaatacctcacatcc
ctcaactatgatgtcttggcctattgcatcattgaggctctggccaatcccgagaaggag
aagatgaagcatgacgacaccaccatctcctcatggcttcagagcctggcaagtctgtgt
ggagccgtgttcagaaagtatccaattgagttggctggccttcttcagtatgtcaccaac
cagctaaaagcagggaagagttttgacttgttgatcctgaaagaggtggtgcagaaaatg
gctggcattgagatcacagacgagatgacctcagagcagttagaggccatgaccggaggg
gagcaactcaaagctgagggtggctactttggccagatcaggaacactaagaagtcatca
caacgtctgaaggatgtgctgctggaccacgaattggccttgccactgtgtctgctcatg
gcccagcaacgaaatggtgtggttttcttagagggtggagagaaacacctcaaacttgtt
ggccacctctatgaccagtgtcatgacacgttggtgcagtttggtggctttctggcctcc
aacctaagcacagaggactacatcaagcgggttccctccattgacatcctttgtaaccag
ttccacaccccacatgatgctgccttcttcctgtctcggccaatgtatgcccatcagatt
ttgtctaagtacgatgagttgaagaaagcagagaaaggcaaccggcagcagcagaaggta
cacaagtatgtggcagcctgtgaacaggtaatgacaccggtgcacgaggctgtgatgtct
ctccatccggccagagtctgggacgacctccgccctcagttctatgccacattctggtcc
ctcacaatgtacgacctggccgttccacatgctgcctatgagcgtgaggtcaacaaactc
aaggcccagatcaaggccatcgaggagaacccggagatacccttgaataagaaaaaaaag
gagaaggaacgctgcactgctctgcaggaaaaactgcaggaggaggagaagaagcagctg
gagcacgtccaaagggttctacaccgtctcaaactggagaaagacaactggttgttggcc
aaatccacaaagaacgagaccataacaaagttcctgcagctctgtctgtttcctcgctgc
atcttctcttccattgacgctgtgtactgtgcccgctttgtcgagctggtccatcagcag
aagacgcccaacttctgcaccctcctgtgctatgatagggtattctctgctatcatttac
actgtggccagctgtacagagaacgagtctcaccgctacggacgcttcctctgctgcatg
ctggagacagtgacccgctggcacagtgaccgtgcaatctatgagaaggagtgcgtcaat
taccctggcttcctgaccatcttcagagccacaggcttcgatggagggaacaaagcagat
cagctagattatgagaacttcaggcacgtggtgcacaaatggcactacatgctgactaaa
gcttcagttcactgcctggagacgggagattacacccacatccggaatatcctcattgtg
cttaccaagatcctgccctgctaccccaaggtcctgaacctgggccaagcgctggagtgc
cgtgtccacaagatctgcctcgaggagaaggacaagaggccagacctctatgccttagca
atgggttattcaggtcggttgaaaagccagaaggttcacatggtccctgagaatgagttt
caccacaaggaccagccagcacgcagtgccacacctgccaatcaacagaacggccccggc
agcacaggcaagcctgccaccagcacaagcaagacagaggaggggacgtcagaggatagc
gatcggggcaaagataaatctcaggggaccacaaagccagtgaacaaagccaacagtgca
gcggccaaagtgaccaccagcaacgggaacggtgctctcaacagcaccaaagtcactaaa
gaacgtgatgacaaagagaagagcgggaaggagaaaaaggagaaaaaggaaaagacacca
ggcagcactccggagacaaaggcggagaatcgtcgggagaagcagagagacgagagagcg
gggaaggaggagcgggcggtacgtgagggtaaggagaagacccccaaggcagacagggag
aaagtgaaggctgaggagaagagcagcaaagacgacaaggccaaagccggcaacggggag
cctgtggagccgtccagggagcgtgacaccatcaaggagtcgaagagcaaggagaaagga
gacaggagtgctgtggccgggtccctcaagtcaccagttcccagatcggagccagccgaa
cttgagagggatcacaaaagacgaaagctcgacagtcactcttctccgtcccactcttcg
tctgttaaggacaatagcaacgaacccaaggagtccacatccaagcaccacgtcaactac
aattcagtagcccggtccaagagcagagagagggagatggagaagaaagattcagacagc
acacaaggccgatccaaagagaagaaggaagaaaaggatcggaaagacaggaaaagagac
agtgctgttaatgaccgtgagacgagccaagaatccaagcgtaaaaaggatgagaatgga
accaattcctccaaaaacagcaagagcacaagtccttcctgtgactccccgctttcagct
gaaaaagagaagagcaaaagatccaaatcgtccagtaaagagaaggccgagtctgtgaaa
cctgagcgaacgtcctctggaggcaaaaaggagtctagacatgataaagagaaatctgaa
aagaaagagaagagggacagcagcggaggaaaggaagagaaaaggcatcataaatcctct
gacaagcacagataa

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