Candidatus Sumerlaea chitinivorans: BRCON_2210
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Entry
BRCON_2210 CDS
T09023
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
schv
Candidatus Sumerlaea chitinivorans
Pathway
schv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BRCON_2210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schv03019
]
BRCON_2210
Messenger RNA biogenesis [BR:
schv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BRCON_2210
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4823
Motif
Other DBs
NCBI-ProteinID:
AXA36987
UniProt:
A0A2Z4Y6X3
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All DBs
Position
2528467..2530074
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AA seq
535 aa
AA seq
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MNMMVYEYGADIFAVDCGHMFPDEDLLGVDLVIPDTTYLEERRDRVRAVIVTHAHDDHMG
ALPYFLKKLPVPVIGPPLACEILRERLAEHGLDQTTQFIPVSPGETILLGDVEVEFLHVT
HSVPQSLALAIHLPFGSIVHSSDYKIDTAPIYGPPFDFQGFARCGERGVVALLCDSTNVE
REGRTPPERSLMEPLDRIFAMAPRSIIFSCFASALHRIQIVLDLALRHRKKVFVTGLNMA
RNIAIAERLGILSIPTDHLLDLSELRRVAPERRVILTTGSQGEPLSALSRMAIDEHKEIK
IKPGDTVILSSRIIPGNERMIYAMINHLFRRGAEVFYEGVANVHVSGHAYREDMRTLIAL
CKPRYLIPIHGEFRHLVLHKHLAEEAGMDPDKIFLLQNGEVLEIDADGAARAEKLNVSRV
LVDGDEVGSIDDIVLRDRRRLSEDGMVIAVLVVDRATGQLVAGPDIVSRGFLFMDENEPF
FDQCKTVVKRAFDDCAQEGKQEWSVVKEAVRAKLKRYIKSETGRFPYILPVVLEI
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaacatgatggtgtacgaatacggcgcggatatttttgccgtggattgtggccacatg
ttccccgatgaagaccttttgggggtggatcttgtcattcctgacactacttacttagag
gagcgccgcgaccgtgtccgcgccgtcattgttacccacgcacacgacgatcacatgggc
gcacttccatactttcttaagaagctgccagtcccggtgatcggcccccccctggcatgc
gaaatcctacgcgaacgactcgcagagcacggcttggatcaaacgactcaattcattcct
gtctcgccgggggagacaatcctgctcggtgacgttgaggtggaatttctccacgtaacc
catagtgtccctcagagccttgccttggccatccacctgccattcgggagtatcgtccat
tccagcgactataaaattgataccgcccccatctatggtcccccgtttgactttcaaggc
tttgcccgctgcggtgagcgcggcgtggtggcgctgctgtgcgactccaccaacgtagaa
cgggaggggcgcactcccccagagcgctcactgatggaaccacttgatcgcatcttcgcc
atggcgccacgctcgattattttttcatgctttgccagcgcccttcaccgcatccagatc
gtcctcgacctcgccttgcgccaccgcaaaaaagttttcgtcacaggcttaaacatggca
cgcaacatcgccatcgccgagcgccttggaatcctctcaatccccacagatcatctcctc
gacctatcggagttgcgtcgtgtggcccccgaacggcgtgtcatcctcaccaccggcagc
caaggcgaacccctcagcgccctaagtcgcatggccattgatgagcacaaagaaatcaaa
atcaaacccggcgataccgtgattctctcctcgcgcatcatcccgggcaatgaacgaatg
atctatgccatgattaaccatctgtttcgccggggagcagaggtgttttacgagggggta
gcgaacgtccacgtctccggccacgcttaccgcgaggacatgcgcacgctcatcgccctt
tgcaaaccacgctatctcatcccaatccatggtgagtttcgccaccttgtcctgcacaaa
catcttgccgaagaagccggaatggatcccgacaagattttcctccttcaaaacggcgaa
gtattggaaattgacgcagacggagcagctcgggccgaaaagcttaacgtcagccgcgtg
ctcgtggacggcgacgaggtcggcagcatcgacgacatcgttctccgcgatcgccggcgc
ctgagcgaggatggcatggtgatcgccgtgctcgttgtcgaccgcgccacaggtcagctc
gtcgcaggacccgacattgtgtcgcgcggattcctttttatggatgagaacgaaccgttc
tttgaccagtgtaaaaccgtagtcaaaagagccttcgacgactgtgctcaggaaggcaaa
caggagtggtcggtcgtcaaagaggccgtgcgggccaaactcaagcgttacattaaatcc
gagaccggccgctttccctacatccttcccgtggtgctggaaatctaa
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