Sphingomonas changnyeongensis: GVO57_01340
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Entry
GVO57_01340 CDS
T07798
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
schy
Sphingomonas changnyeongensis
Pathway
schy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
schy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GVO57_01340 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
schy03019
]
GVO57_01340 (recQ)
03400 DNA repair and recombination proteins [BR:
schy03400
]
GVO57_01340 (recQ)
Enzymes [BR:
schy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GVO57_01340 (recQ)
Messenger RNA biogenesis [BR:
schy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GVO57_01340 (recQ)
DNA repair and recombination proteins [BR:
schy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GVO57_01340 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
QHL89716
UniProt:
A0A7Z2S6W2
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All DBs
Position
complement(267839..269602)
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AA seq
587 aa
AA seq
DB search
MGDVQALLQSVFGFPGFRGVQGQVIDRVMAGRHTLAVMPTGAGKSLCYQLPAVARDGLCV
VISPLIALMHDQLRSALAVGIRAATLTSADDNRRETIDRLRAGALDLLYVAPERAATPQF
RELIAEARINLFAIDEAHCVSEWGHDFRPDYRLLRPLLDSFPHVPRLALTATADAHTRAD
ILVQLGLPEDGMIIAGFDRPNIRYAISPRDGAARQIADLVRQTPGAGIVYAPSRAGTEKL
AAQLAATGRPVRVYHAGLSPELRQANQAAFVASEDMVMVATIAFGMGIDKPDVRFVAHAA
LPRSIEAYYQETGRAGRDGAPAAAHLFWGAEDFVRARQRLDEVEPDRRASEQARLAALSG
LVETGDCRRMVLLRHFGEQPAGPCGNCDNCLTPPARVDATELARKLLSAVFRTGQTYGAG
YVEEILLGRSTARSQMNGHDSLSVFGIVDAADAPLIRPLTRALMLREALVTTEHGGLMLG
AQARPILKGEQPVEIALPPRRTRKRGGAAVPAADDPLFEALRACRRALAAEAGVPPYVIF
HDATLRDMAAARPDSLWAMGQITGVGARKLDAYGPAFLRAIAEHLSA
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatgttcaggcgctgctgcagtcggttttcggctttccgggctttcgcggcgtt
caggggcaggtgatcgaccgggtgatggccggccgccatacgctggcggtcatgccgacc
ggggcgggcaagtcactctgctaccagctgccggcggtggcgcgtgatggcctgtgtgtc
gtcatctcgccgctgatcgcgctgatgcatgaccagctgcgctcggcattggcggtcggc
atccgcgcggcgacgctgacctccgccgacgacaatcgccgcgagacgatcgaccggctg
cgcgcaggcgcgctcgacctgctctatgtcgcgcccgaacgcgcggcgacgccgcagttc
cgcgagctgatcgccgaggcgcggatcaacctgttcgccatcgacgaggcgcattgcgtg
tccgaatgggggcatgatttccgccccgattaccggctgctgcgcccgctgctcgacagc
ttcccgcacgtgccccggctggcgctcaccgccaccgccgatgcgcatacccgcgccgac
attctggtccagctcggcctgcccgaagacgggatgatcatcgccgggttcgaccggccc
aatatccgctatgccatctccccgcgcgacggcgcggcgcggcagatcgccgatctggtc
cgccagacgccgggggcgggcatcgtctatgcgccctcgcgcgccggcaccgaaaagctc
gccgcccagctggcggcgaccgggcggccggtgcgcgtctatcatgccgggctgtcgccc
gagctgcgccaggccaatcaggcggcgttcgtcgcgtccgaggacatggtgatggtcgcg
accatcgccttcggcatggggatcgacaagcccgatgtgcgtttcgtcgcccatgccgcg
ctgccgcgttcgatcgaggcctattatcaggaaaccggccgtgccgggcgcgacggggca
ccggctgccgcgcatctgttctggggcgcggaggatttcgtgcgcgcgcgccagcggctg
gacgaggtcgagcccgaccggcgggcgagcgaacaggcgcggctggcggcgctcagcggt
ctggtcgagacgggcgactgccggcggatggtgctgctgcgccatttcggcgagcagccg
gctggcccgtgcggcaattgcgacaattgcctgaccccgccggcgcgcgtcgacgcgacc
gagctggcgcgcaagctgctgtcggcggtgttccgcaccggccagacctatggcgcgggc
tatgtcgaggaaatcctgctcggccgctcgaccgcgcgcagccagatgaacggccatgac
agcctgtcggtgttcggcatcgtggatgccgccgacgcgccgctgatccgcccgctcacc
cgcgcgctgatgctgcgcgaggcgctggtgacgaccgaacatggcgggctgatgctgggc
gcgcaggcccgcccgatcctgaagggcgaacagccggtcgaaatcgcactgccgccgcgc
cggacgcgcaagcggggcggcgcagccgtgcccgcagccgatgatccgctgttcgaggcg
ctgcgcgcctgccgccgcgcgcttgcggccgaggcgggcgtgccgccctatgtgatcttc
catgacgcgacgctgcgcgacatggccgccgcgcggcccgacagcctgtgggccatgggt
cagatcaccggcgtcggcgcgcgcaagctcgatgcctatgggccggcattcctgcgcgcg
atcgccgagcatctgtcggcctga
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